Hg_chrom3_TN10mRNA_4997
Organism: Heterodera glycines Gene Locus: chr3:3813161-3820718 Feature type: polypeptideProtein Sequence
Length: 456
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.071 | 1.326 | 0.758 | 0.756 | 1.023 | 1.012 | 0.992 | 1.316 | 1.218 | 1.008 | 0.631 | 1.032 | 1.279 | 0.717 | 1.208 | 1.472 | 1.079 | 0.831 | 0.843 | 0.322 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4730
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— |
KRKL,RKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.438
|
0.407
|
0.160
|
0.670
|
0.085
|
0.116
|
0.069
|
0.633
|
0.133
|
0.203
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007469
|
1.000
|
1.000
|
Hsc_gene_25811.t1
|
Hsc_gene_25811.t1
|
— |
P53602.1 Diphosphomevalonate decarboxylase [Homo sapiens]
|
KAI1703865.1 diphosphomevalonate decarboxylase [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004163|GO:0005829|GO:0008299|GO:0016831|GO:0019287
|
GO:0008150_0.692|GO:0005575_0.644|GO:0110165_0.638|GO:0009987_0.627|GO:0005622_0.554|GO:0003674_0.511
|
IPR005935+3-412+|IPR014721+9-184+|IPR020568+9-173+|IPR029765+10-327+|IPR036554+185-357_192-327+|IPR041431+194-406+|IPR053859+13-177+
|
— |
PF18376+194-406+Mevalonate_5-diphosphate_decarboxylase_C-terminal_domain|PF22700+13-177+Diphosphomevalonate_decarboxylase-like_N-terminal_domain
|
G3DSA:3.30.230.10:FF:000072+7-198+Diphosphomevalonate_decarboxylase
|
PTHR10977+9-407+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
333-389
|
2.000
|
1-332;390-456
|
6n10_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
49394.440
|
7.238
|
5.000
|
23.026
|
9.430
|
49.561
|
50.439
|
12.719
|
10.307
|
55.702
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1004.018
|
868.624
|
649.847
|
902.887
|
1109.420
|
871.988
|
1486.460
|
718.233
|
756.492
|
1347.414
|
1094.162
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.648
|
— |
0.583
|
0.266
|
-0.333
|
0.780
|
— |
1.188
|
— | — | — | — | — |
No JSON data available for plots.