Hg_chrom3_TN10mRNA_5008
Organism: Heterodera glycines Gene Locus: chr3:3872312-3873333 Feature type: polypeptideProtein Sequence
Length: 127
(Signal peptide: 1-40)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.366 | 1.465 | 0.429 | 1.086 | 0.525 | 1.009 | 0.656 | 0.0 | 1.05 | 1.809 | 0.716 | 2.779 | 3.5 | 1.363 | 1.768 | 1.237 | 0.387 | 0.597 | 0.0 | 0.463 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4741
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
3.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRRPKFGRIIGKKYDR
|
— | — | — | — |
1-40
|
0.771
|
0.911
|
0.000
|
0.000
|
0.198
|
0.222
|
0.025
|
0.137
|
0.090
|
0.011
|
0.021
|
0.042
|
0.076
|
0.804
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001938
|
3.000
|
1.000
|
Hsc_gene_25824.t1
|
— | — | — |
KAH7725462.1 hypothetical protein AAVH_06912 [Aphelenchus avenae]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-127
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
14718.460
|
10.830
|
10.000
|
18.898
|
14.173
|
40.157
|
59.843
|
13.386
|
5.512
|
42.520
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
28.881
|
1.210
|
2.621
|
1.682
|
0.483
|
1.863
|
2.937
|
3.816
|
0.000
|
120.873
|
69.070
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-7.737
|
— |
-7.795
|
— | — |