Hg_chrom3_TN10mRNA_5009
Organism: Heterodera glycines Gene Locus: chr3:3887237-3891431 Feature type: polypeptideProtein Sequence
Length: 372
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.125 | 1.438 | 0.635 | 0.556 | 1.434 | 0.62 | 0.768 | 0.672 | 1.075 | 1.344 | 1.588 | 1.581 | 1.643 | 0.569 | 0.494 | 0.73 | 1.058 | 1.018 | 0.207 | 0.712 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4742
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— |
KKGIRVKNAFKKKIE,KRLVKLIKKRDKCKVK,KRFGLTEVLAQLDGKRLVK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.396
|
0.315
|
0.244
|
0.586
|
0.144
|
0.189
|
0.174
|
0.073
|
0.173
|
0.791
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000246
|
7.000
|
3.000
|
Hsc_gene_16223.t1;Hsc_gene_24660.t1;Hsc_gene_25832.t1
|
— | — |
Q60854.1 Serpin B6 [Mus musculus]
|
KAH7723002.1 ANISERP protein [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.806|GO:0110165_0.797|GO:0008150_0.768|GO:0003674_0.615|GO:0005622_0.613|GO:0016020_0.576|GO:0005737_0.551|GO:0005488_0.534|GO:0065007_0.527|GO:0008152_0.519|GO:0071944_0.511|GO:0009987_0.510|GO:0043226_0.506
|
IPR000215+15-366+|IPR023796+15-366_21-372+|IPR036186+10-369+|IPR042178+31-340+|IPR042185+173-367+
|
SM00093+21-372+
|
PF00079+15-366+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+15-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-372
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
41116.510
|
8.213
|
5.500
|
26.344
|
9.946
|
46.505
|
53.495
|
14.247
|
12.097
|
48.656
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
114.030
|
13.819
|
27.807
|
24.320
|
71.755
|
95.315
|
75.590
|
49.968
|
0.000
|
364.418
|
208.239
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
0.680
|
— |
1.532
|
— | — |
-1.044
|
0.744
|
-9.334
|
5.461
|
— | — |
8.774
|
No JSON data available for plots.