Hg_chrom3_TN10mRNA_5010
Organism: Heterodera glycines Gene Locus: chr3:3893100-3896315 Feature type: polypeptideProtein Sequence
Length: 445
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.967 | 1.516 | 0.695 | 0.465 | 1.386 | 0.576 | 0.589 | 0.787 | 1.199 | 1.306 | 1.498 | 1.454 | 2.06 | 0.648 | 0.734 | 0.803 | 1.179 | 0.817 | 0.173 | 0.793 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4743
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.896
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|extracellular
|
— |
KKGIRVKNAFKKKIE,KRLVKLIKKRDKCKVK,KRFGLIELLAQLDGKRLVK
|
— | — |
75-95
|
0.961
|
— | — |
0.000
|
— | — |
0.279
|
0.266
|
0.104
|
0.672
|
0.110
|
0.174
|
0.199
|
0.136
|
0.167
|
0.858
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000246
|
7.000
|
3.000
|
Hsc_gene_16223.t1;Hsc_gene_24660.t1;Hsc_gene_25832.t1
|
— | — |
P80034.1 Antichymotrypsin-2 [Bombyx mori]
|
KAH7723002.1 ANISERP protein [Aphelenchus avenae]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.802|GO:0110165_0.799|GO:0008150_0.746|GO:0003674_0.619|GO:0005622_0.616|GO:0016020_0.613|GO:0005737_0.540|GO:0005488_0.530|GO:0043226_0.527|GO:0065007_0.508
|
IPR000215+15-68+|IPR023796+15-439_21-445+|IPR036186+7-443+|IPR042178+9-121_142-396+|IPR042185+252-439+
|
SM00093+21-445+
|
PF00079+15-439+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+15-68+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-445
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.722
|
50218.850
|
8.814
|
9.500
|
27.191
|
11.910
|
48.764
|
51.236
|
15.056
|
12.135
|
46.517
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
black
|
20.546
|
2.744
|
5.807
|
7.815
|
16.096
|
18.686
|
33.970
|
15.143
|
0.000
|
52.293
|
29.882
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.372
|
— |
1.016
|
— |
0.874
|
— |
1.310
|
-6.519
|
— | — | — | — |
No JSON data available for plots.