Hg_chrom3_TN10mRNA_5012
Organism: Heterodera glycines Gene Locus: chr3:3904621-3907467 Feature type: polypeptideProtein Sequence
Length: 431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.971 | 1.241 | 0.97 | 0.56 | 1.547 | 0.952 | 0.663 | 1.044 | 1.186 | 1.38 | 0.879 | 1.638 | 1.869 | 0.446 | 0.758 | 1.061 | 0.456 | 0.809 | 1.428 | 1.297 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4745
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.775
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.563
|
0.139
|
0.019
|
0.700
|
0.184
|
0.222
|
0.118
|
0.006
|
0.126
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001187
|
2.000
|
3.000
|
Hsc_gene_25836.t1;Hsc_gene_25836.t2;Hsc_gene_5335.t1
|
Hsc_gene_25836.t1;Hsc_gene_25836.t2
|
— |
Q9Y2F9.1 BTB/POZ domain-containing protein 3 [Homo sapiens]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.773|GO:0110165_0.760|GO:0008150_0.691|GO:0005622_0.664|GO:0005737_0.536|GO:0009987_0.520|GO:0043226_0.517|GO:0043229_0.509
|
IPR000210+10-117_19-95_19-126+|IPR002083+293-426_297-428+|IPR008974+285-431+|IPR011333+1-152_3-117+|IPR011705+129-240_133-238+
|
SM00225+19-126+|SM00875+129-240+
|
PF00651+10-117+BTB/POZ_domain|PF07707+133-238+BTB_And_C-terminal_Kelch|PF22486+297-428+MATH_domain
|
— |
PTHR45774+10-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-431
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
49356.970
|
4.617
|
-17.500
|
26.218
|
15.081
|
45.476
|
54.524
|
11.601
|
14.617
|
44.084
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
838.444
|
11.793
|
50.479
|
37.160
|
38.519
|
39.618
|
67.522
|
20.415
|
0.000
|
3568.630
|
2039.217
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.865
|
1.519
|
— | — | — |
0.779
|
-1.073
|
1.871
|
-12.588
|
6.073
|
-6.159
|
— | — |
No JSON data available for plots.