Hg_chrom3_TN10mRNA_5014
Organism: Heterodera glycines Gene Locus: chr3:3914259-3916822 Feature type: polypeptideProtein Sequence
Length: 212
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.152 | 0.658 | 1.029 | 0.488 | 1.022 | 1.33 | 0.618 | 1.415 | 0.314 | 1.721 | 1.358 | 1.387 | 1.441 | 1.179 | 0.963 | 0.539 | 0.851 | 0.858 | 1.089 | 0.971 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4747
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.590
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KKDIEAGNAEELLQKCKKQ
|
3-23
|
0.992
|
27-49
|
0.920
|
— | — |
0.000
|
— | — |
0.126
|
0.875
|
0.100
|
0.328
|
0.030
|
0.062
|
0.127
|
0.006
|
0.105
|
0.193
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007473
|
1.000
|
1.000
|
Hsc_gene_25840.t1
|
Hsc_gene_25840.t1
|
— | — |
KAI1728705.1 thioredoxin-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.928|GO:0005575_0.673|GO:0110165_0.673|GO:0005622_0.623|GO:0016020_0.592|GO:0005737_0.577|GO:0043226_0.576|GO:0043229_0.560|GO:0032501_0.542|GO:0043227_0.541|GO:0043231_0.518
|
IPR012336+94-184+|IPR013766+42-211+|IPR036249+82-195+|IPR052259+83-199+
|
— |
PF13905+94-184+Thioredoxin-like
|
— |
PTHR13871+83-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-212
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.673
|
24052.760
|
8.986
|
7.000
|
28.302
|
12.736
|
45.283
|
54.717
|
16.509
|
11.792
|
45.755
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
1494.481
|
433.728
|
652.673
|
896.482
|
1336.052
|
1136.040
|
1268.400
|
699.257
|
1107.293
|
3299.400
|
2359.925
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.359
|
0.911
|
0.567
|
0.544
|
-0.219
|
— |
-0.804
|
1.002
|
— | — | — | — | — |
No JSON data available for plots.