Hg_chrom3_TN10mRNA_5018
Organism: Heterodera glycines Gene Locus: chr3:3951771-3956722 Feature type: polypeptideProtein Sequence
Length: 611
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.533 | 1.522 | 0.863 | 0.564 | 1.337 | 1.049 | 0.448 | 0.982 | 1.782 | 1.415 | 1.612 | 1.733 | 1.955 | 0.441 | 0.735 | 1.052 | 0.778 | 0.57 | 0.881 | 0.77 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4751
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRAYLKFNQTTNEKSEKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.401
|
0.399
|
0.031
|
0.600
|
0.083
|
0.151
|
0.172
|
0.027
|
0.121
|
0.204
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001676
|
3.000
|
1.000
|
Hsc_gene_8447.t1
|
— | — | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
KAI0132016
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.713|GO:0110165_0.710|GO:0016020_0.670|GO:0005622_0.668|GO:0043226_0.630|GO:0008150_0.625|GO:0043229_0.622|GO:0043227_0.584|GO:0043231_0.563|GO:0003674_0.560|GO:0009987_0.513
|
IPR002934+128-167+|IPR007010+450-513+|IPR007012+307-443+|IPR011068+449-539+|IPR043519+110-270_111-260+
|
— |
PF01909+128-167+Nucleotidyltransferase_domain|PF04926+450-513+Poly(A)_polymerase_predicted_RNA_binding_domain|PF04928+307-443+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+88-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-611
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
71078.220
|
8.804
|
15.000
|
28.969
|
12.766
|
51.718
|
48.282
|
16.203
|
12.766
|
39.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
494.945
|
0.616
|
7.452
|
63.574
|
27.619
|
5.090
|
3.036
|
1.945
|
119.948
|
2034.422
|
1213.933
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.371
|
6.561
|
3.203
|
-1.235
|
-2.422
|
— | — | — |
-4.195
|
— |
-5.660
|
— | — |
No JSON data available for plots.