Hg_chrom3_TN10mRNA_5022
Organism: Heterodera glycines Gene Locus: chr3:3966344-3968325 Feature type: polypeptideProtein Sequence
Length: 212
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.713 | 2.194 | 1.029 | 0.813 | 1.336 | 0.726 | 0.281 | 0.943 | 0.839 | 1.275 | 1.715 | 1.387 | 1.048 | 0.998 | 0.963 | 1.28 | 0.619 | 0.5 | 1.089 | 0.971 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4755
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.659
|
0.365
|
0.042
|
0.450
|
0.192
|
0.059
|
0.088
|
0.013
|
0.183
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007477
|
1.000
|
1.000
|
Hsc_gene_25847.t1
|
Hsc_gene_25847.t1
|
— | — | — |
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.928|GO:0110165_0.923|GO:0005622_0.894|GO:0016020_0.861|GO:0043226_0.848|GO:0043229_0.844|GO:0043227_0.806|GO:0005737_0.786|GO:0043231_0.779|GO:0071944_0.689|GO:0005886_0.681|GO:0005773_0.617|GO:0012505_0.608|GO:0031974_0.608|GO:0043233_0.608|GO:0070013_0.608|GO:0005783_0.562|GO:0005788_0.540
|
IPR001623+18-75_19-86_20-69_140-196_141-196_142-191+|IPR036869+5-104_15-71_107-198_134-193+
|
SM00271+18-75_140-196+
|
PF00226+20-69_142-191+DnaJ_domain
|
— |
PTHR43096+19-69+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;71-127
|
2.000
|
9-70;128-212
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.901
|
24484.750
|
8.841
|
7.000
|
31.604
|
10.377
|
56.604
|
43.396
|
17.925
|
13.679
|
47.170
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
red
|
178.674
|
23.376
|
17.189
|
2.736
|
1.660
|
1.773
|
10.863
|
1.933
|
0.000
|
759.376
|
433.929
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.671
|
-3.229
|
-2.540
|
— | — |
2.635
|
— |
2.641
|
— | — | — | — | — |
No JSON data available for plots.