Hg_chrom3_TN10mRNA_5024
Organism: Heterodera glycines Gene Locus: chr3:3978312-3985551 Feature type: polypeptideProtein Sequence
Length: 546
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.001 | 1.278 | 0.766 | 0.442 | 0.977 | 0.751 | 0.959 | 0.824 | 0.977 | 1.708 | 0.666 | 1.508 | 1.475 | 1.092 | 1.196 | 0.811 | 0.781 | 1.027 | 0.986 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4757
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
endoplasmic_reticulum
|
— |
RKQNGLASQEDSEAVRRLK
|
20-51
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.175
|
0.326
|
0.033
|
0.375
|
0.530
|
0.268
|
0.260
|
0.193
|
0.157
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007478
|
1.000
|
1.000
|
Hsc_gene_25850.t1
|
Hsc_gene_25850.t1
|
— |
Q6GMR7.1 Fatty-acid amide hydrolase 2 [Homo sapiens]
|
KAF7640273.1 Amidase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.749|GO:0110165_0.748|GO:0008150_0.696|GO:0003674_0.644|GO:0005622_0.597|GO:0003824_0.543|GO:0016020_0.525|GO:0009987_0.516|GO:0043226_0.513|GO:0008152_0.502
|
IPR020556+205-236+|IPR023631+66-510+|IPR036928+20-519_46-523+|IPR052739+33-528+
|
— |
PF01425+66-510+Amidase
|
— |
PTHR43372+33-528+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-546
|
9fz1_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
60374.640
|
7.674
|
5.500
|
21.978
|
10.806
|
40.842
|
59.158
|
11.905
|
10.073
|
50.549
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
1614.038
|
642.024
|
1437.018
|
2214.080
|
3596.339
|
3663.865
|
1735.376
|
2235.567
|
402.609
|
937.860
|
708.467
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.935
|
1.649
|
0.731
|
0.668
|
— |
-1.071
|
-0.806
|
— | — | — | — | — | — |
No JSON data available for plots.