Hg_chrom3_TN10mRNA_5033
Organism: Heterodera glycines Gene Locus: chr3:4127404-4128970 Feature type: polypeptideProtein Sequence
Length: 365
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.382 | 1.465 | 0.897 | 0.189 | 2.146 | 1.194 | 0.391 | 0.411 | 1.826 | 0.889 | 2.823 | 1.289 | 1.218 | 0.211 | 1.342 | 0.822 | 0.539 | 0.415 | 0.843 | 0.806 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4766
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKFGQFIPKQKKYTK,KRELVRKFEEMRKEKI,KKLEIRMRNVRRWRKQ,KKLGKSLDKIYEMKRKLRQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.851
|
0.067
|
0.013
|
0.336
|
0.017
|
0.011
|
0.012
|
0.011
|
0.057
|
0.265
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000145
|
12.000
|
1.000
|
Hsc_gene_14377.t1
|
— | — | — |
KAI3412127.1 hypothetical protein GPALN_002169 [Globodera pallida]
|
MBQ63217
|
0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-133
|
1.000
|
134-365
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
43893.540
|
10.340
|
28.500
|
43.836
|
9.041
|
63.836
|
36.164
|
26.027
|
17.808
|
31.233
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
5.046
|
0.154
|
0.143
|
6.366
|
7.549
|
3.009
|
1.215
|
0.000
|
0.000
|
15.163
|
8.665
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.241
|
5.563
|
— | — | — |
-5.411
|
— | — | — | — | — | — |
No JSON data available for plots.