Hg_chrom3_TN10mRNA_5051
Organism: Heterodera glycines Gene Locus: chr3:4190530-4192323 Feature type: polypeptideProtein Sequence
Length: 290
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.561 | 2.005 | 1.317 | 0.357 | 1.092 | 1.592 | 0.698 | 0.862 | 1.609 | 0.839 | 1.567 | 1.217 | 2.011 | 0.265 | 0.915 | 1.133 | 0.452 | 0.522 | 0.531 | 1.217 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4783
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKFNEFKNEQRQRKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.481
|
0.083
|
0.006
|
0.604
|
0.318
|
0.243
|
0.130
|
0.039
|
0.152
|
0.452
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003531
|
1.000
|
2.000
|
Hsc_gene_5364.t1;Hsc_gene_5364.t2
|
Hsc_gene_5364.t1
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
XP_056799681
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.936|GO:0009987_0.676|GO:0065007_0.593|GO:0050789_0.580|GO:0008152_0.575|GO:0044238_0.572|GO:0044237_0.569|GO:0009058_0.564|GO:0005575_0.560|GO:0044249_0.560|GO:0050794_0.559|GO:0110165_0.557|GO:0005622_0.542|GO:0019222_0.527|GO:0031323_0.522|GO:0080090_0.513|GO:0043226_0.510|GO:0048519_0.508|GO:0009889_0.507|GO:0043229_0.507|GO:0031326_0.506
|
IPR003877+167-283_195-281+|IPR013320+120-284+|IPR043136+101-289+|IPR044736+152-280+
|
SM00449+167-283+
|
PF00622+195-281+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-89
|
1.000
|
90-290
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
33695.840
|
8.564
|
5.500
|
30.345
|
13.793
|
55.862
|
44.138
|
16.552
|
13.793
|
43.103
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
244.529
|
173.876
|
378.053
|
378.404
|
389.118
|
364.861
|
342.524
|
279.343
|
178.060
|
71.453
|
117.142
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.890
|
0.985
|
— | — | — | — |
-0.493
|
0.433
|
— | — | — | — | — |
No JSON data available for plots.