Hg_chrom3_TN10mRNA_5052
Organism: Heterodera glycines Gene Locus: chr3:4193681-4196146 Feature type: polypeptideProtein Sequence
Length: 143
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.407 | 1.464 | 0.636 | 0.482 | 1.049 | 0.717 | 0.916 | 1.049 | 0.932 | 1.323 | 0.53 | 1.234 | 3.302 | 1.076 | 0.999 | 1.299 | 0.917 | 0.636 | 2.152 | 0.823 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4784
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.595
|
0.309
|
0.055
|
0.530
|
0.181
|
0.149
|
0.166
|
0.024
|
0.055
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007481
|
1.000
|
1.000
|
Hsc_gene_5361.t1
|
Hsc_gene_5361.t1
|
— | — |
KAI1693354.1 autophagocytosis associated protein, active-site domain-containing protein [Ditylenchus destructor]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019787
|
GO:0008150_0.929|GO:0065007_0.818|GO:0050789_0.807|GO:0003674_0.805|GO:0008152_0.764|GO:0005575_0.761|GO:0110165_0.750|GO:0044238_0.747|GO:0043170_0.734|GO:0019538_0.716|GO:0003824_0.699|GO:0036211_0.692|GO:0043412_0.692|GO:0005622_0.679|GO:0016740_0.677|GO:0005737_0.676|GO:0140096_0.668|GO:0016746_0.663|GO:0016755_0.658|GO:0019787_0.658|GO:0061650_0.654|GO:0019777_0.650|GO:0061651_0.650|GO:0009987_0.621|GO:0050896_0.566|GO:0050794_0.552|GO:0051716_0.532
|
IPR007135+36-136+
|
— |
PF03987+36-136+Autophagocytosis_associated_protein,_active-site_domain
|
— |
PTHR14957+34-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-143
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.805
|
16498.710
|
6.220
|
-0.500
|
20.280
|
19.580
|
44.056
|
55.944
|
10.490
|
9.790
|
46.853
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
126.520
|
73.559
|
121.202
|
138.156
|
145.876
|
158.533
|
191.260
|
134.518
|
49.301
|
155.383
|
109.919
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.488
|
0.772
|
0.300
|
— | — | — |
-0.342
|
0.651
|
— | — | — | — | — |
No JSON data available for plots.