Hg_chrom3_TN10mRNA_5054
Organism: Heterodera glycines Gene Locus: chr3:4203059-4211380 Feature type: polypeptideProtein Sequence
Length: 1,168
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.697 | 0.737 | 0.903 | 0.384 | 2.34 | 1.361 | 0.938 | 1.327 | 0.514 | 0.625 | 1.647 | 0.957 | 0.452 | 1.004 | 2.044 | 0.942 | 1.053 | 0.558 | 0.395 | 0.403 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4786
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.886
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RREQTNESGQKRERS,KKRRDSERDEERQKSR,KKQDGEKEGGEEREGRK,KKQDGEKEGVKERVERK,KRERSEREKERERRKEE,KKKQQRDSERDEERQKSR,KKKKREDNERIGERRKEH,RRKKRSKKQKREKRKRHH,KRRRKNKKEKKKSKGERT,KKETGEKSKQMEEEERKKD,RKEDDGGKEDEVKSKKRRD,KKKKRRENERIEERKKSRE,RKQEEEDGGKEEERKELKK,KKKQRDNEFERDEERQKSR,KKEDGEKGSKRREGRKQEK,RKQEKKDGGKEEPKKKQQR,RKHEKEDEWKEPKKKKRED,KKKKREDSERVEERKKSRE,KKENSDKGVKERESRKQEK,RKQEKEDNGKEEPKKKKRE,RKEDGGREREEERERKKEE,RKKEEGGKGDERRKKRSKK,KKEEGGKGDERRKKRSKKQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.925
|
0.032
|
0.003
|
0.241
|
0.027
|
0.017
|
0.048
|
0.002
|
0.070
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001940
|
1.000
|
3.000
|
Hsc_gene_5348.t1;Hsc_gene_5349.t1;Hsc_gene_5349.t2
|
Hsc_gene_5348.t1
|
— |
P97868.5 E3 ubiquitin-protein ligase RBBP6 [Mus musculus]
|
KAH7731975.1 Zinc knuckle family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0008270
|
GO:0008150_0.846|GO:0005575_0.793|GO:0110165_0.793|GO:0005622_0.755|GO:0043226_0.742|GO:0016020_0.736|GO:0043229_0.729|GO:0008152_0.713|GO:0043170_0.713|GO:0044238_0.670|GO:0043227_0.647|GO:0005634_0.646|GO:0043231_0.646|GO:0019538_0.610|GO:0009987_0.599|GO:0065007_0.587|GO:0050789_0.580|GO:0009056_0.571|GO:0009057_0.571|GO:0006508_0.563|GO:0030163_0.563|GO:0051603_0.558|GO:0006511_0.557|GO:0019941_0.557|GO:0043632_0.557|GO:0003674_0.554
|
IPR001841+249-287+|IPR001878+158-172+|IPR013083+236-315+|IPR014891+4-75+|IPR017907+265-274+|IPR025829+153-172+|IPR036875+139-173+
|
SM01180+4-75+
|
PF08783+4-75+DWNN_domain|PF13696+153-172+Zinc_knuckle
|
— |
PTHR15439+19-1162+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
105-240;336-1168
|
2.000
|
1-104;241-335
|
2c7h_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
133060.300
|
9.492
|
37.500
|
42.551
|
6.164
|
64.041
|
35.959
|
23.545
|
19.007
|
45.034
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
lightcyan
|
2703.908
|
2792.533
|
2424.381
|
2319.768
|
2354.010
|
2173.474
|
1626.801
|
1265.133
|
3348.717
|
3709.522
|
3554.891
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.435
|
-0.405
|
— | — | — |
-0.407
|
-0.887
|
0.506
|
— | — | — | — | — |
No JSON data available for plots.