Hg_chrom3_TN10mRNA_5055
Organism: Heterodera glycines Gene Locus: chr3:4213629-4216060 Feature type: polypeptideProtein Sequence
Length: 209
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.113 | 1.001 | 0.435 | 0.66 | 0.957 | 2.331 | 0.684 | 0.478 | 0.957 | 1.293 | 0.87 | 1.689 | 1.063 | 1.472 | 0.781 | 0.82 | 1.412 | 0.652 | 0.368 | 0.985 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4787
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_5346
|
— |
8-Eggs_J4_Males
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-27
|
0.995
|
1.000
|
0.000
|
0.000
|
0.286
|
0.217
|
0.052
|
0.345
|
0.149
|
0.046
|
0.067
|
0.180
|
0.151
|
0.914
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007483
|
1.000
|
1.000
|
Hsc_gene_5346.t1
|
Hsc_gene_5346.t1
|
— | — |
KAI1702137.1 pepsin inhibitor-3-like repeated domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR010480+38-80_104-164+|IPR038412+30-112_113-191+|IPR051901+19-169+
|
— |
PF06394+38-80_104-164+Pepsin_inhibitor-3-like_repeated_domain
|
— |
PTHR37969+19-169+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
147-209
|
1.000
|
1-146
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.810
|
23070.410
|
8.460
|
4.000
|
18.660
|
8.612
|
46.411
|
53.589
|
10.526
|
8.134
|
50.239
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
777.092
|
233.082
|
2.102
|
7.543
|
155.387
|
633.564
|
55.593
|
272.466
|
3.101
|
2887.552
|
1651.359
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-7.038
|
-5.084
|
1.972
|
4.332
|
2.041
|
-3.499
|
-1.334
|
-2.143
|
-9.999
|
— |
-4.144
|
— | — |