Hg_chrom3_TN10mRNA_5061
Organism: Heterodera glycines Gene Locus: chr3:4229709-4234833 Feature type: polypeptideProtein Sequence
Length: 444
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.89 | 0.471 | 0.532 | 1.165 | 0.563 | 0.635 | 0.992 | 1.464 | 1.201 | 1.309 | 0.546 | 2.12 | 1.627 | 0.78 | 2.114 | 0.901 | 1.218 | 0.921 | 1.04 | 0.927 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4793
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.557
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRKL,RWLKRKC,SKRRHYRRHRRSGRRRR,KRRHYRRHRRSGRRRRTA,RRQMCRSDDGGSKRRHYRR
|
22-42
|
0.997
|
6-32
|
0.963
|
— | — |
0.013
|
— | — |
0.079
|
0.115
|
0.132
|
0.094
|
0.303
|
0.418
|
0.266
|
0.004
|
0.677
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007484
|
1.000
|
1.000
|
Hsc_gene_5339.t1
|
Hsc_gene_5338.t1;Hsc_gene_5339.t1
|
— |
O17185.2 Two pore potassium channel protein sup-9 [Caenorhabditis elegans]
|
KAH7718736.1 CRE-TWK-20 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005267|GO:0016020|GO:0071805
|
GO:0008150_0.959|GO:0009987_0.846|GO:0003674_0.838|GO:0006810_0.764|GO:0051179_0.764|GO:0051234_0.764|GO:0005575_0.737|GO:0110165_0.737|GO:0006811_0.711|GO:0006812_0.686|GO:0030001_0.686|GO:0016020_0.680|GO:0055085_0.676|GO:0034220_0.664|GO:0006813_0.659|GO:0098660_0.648|GO:0098662_0.636|GO:0098655_0.634|GO:0005215_0.633|GO:0022857_0.633|GO:0071944_0.630|GO:0015267_0.629|GO:0022803_0.629|GO:0005216_0.628|GO:0015075_0.628|GO:0005886_0.622|GO:0008324_0.614|GO:0071805_0.614|GO:0015318_0.613|GO:0005261_0.606|GO:0022890_0.606|GO:0046873_0.604|GO:0005267_0.593|GO:0015079_0.593
|
IPR003092+30-52_141-157_247-261+|IPR003280+30-354_108-136_222-231+|IPR013099+95-151_193-266+
|
— |
PF07885+95-151_193-266+Ion_channel
|
— |
PTHR11003+30-354+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
344-444
|
1.000
|
1-343
|
9g9x_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
50088.630
|
10.645
|
40.500
|
23.198
|
13.288
|
41.441
|
58.559
|
16.892
|
6.306
|
48.198
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
82.542
|
58.013
|
276.079
|
143.622
|
31.599
|
27.640
|
22.897
|
184.076
|
3.792
|
79.305
|
46.943
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.022
|
1.171
|
-0.834
|
-2.211
|
— | — |
2.638
|
-2.867
|
— |
5.503
|
— | — | — |
No JSON data available for plots.