Hg_chrom3_TN10mRNA_5062
Organism: Heterodera glycines Gene Locus: chr3:4235948-4242318 Feature type: polypeptideProtein Sequence
Length: 451
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 1.599 | 1.25 | 0.612 | 1.441 | 0.739 | 0.475 | 0.776 | 1.33 | 1.288 | 1.243 | 1.174 | 1.786 | 0.512 | 0.769 | 1.077 | 0.909 | 0.739 | 1.364 | 0.848 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4794
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-ppJ2_pJ2_J3_Females
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-21
|
0.713
|
0.999
|
0.000
|
0.000
|
0.549
|
0.147
|
0.013
|
0.623
|
0.233
|
0.170
|
0.049
|
0.015
|
0.138
|
0.232
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000401
|
7.000
|
1.000
|
Hsc_gene_16485.t1
|
Hsc_gene_5337.t1
|
— |
O82343.2 BTB/POZ domain-containing protein At2g46260 [Arabidopsis thaliana]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.778|GO:0008150_0.751|GO:0110165_0.739|GO:0005622_0.681|GO:0005737_0.594|GO:0009987_0.584|GO:0003674_0.583|GO:0043226_0.580|GO:0043229_0.556|GO:0016020_0.507
|
IPR000210+44-164_53-127_53-165+|IPR002083+317-446_340-440+|IPR008974+320-451+|IPR011333+26-191_34-160+|IPR011705+169-275_172-273+
|
SM00225+53-165+|SM00875+169-275+
|
PF00651+44-164+BTB/POZ_domain|PF07707+172-273+BTB_And_C-terminal_Kelch|PF22486+340-440+MATH_domain
|
— |
PTHR45774+36-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-451
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
51839.660
|
4.845
|
-12.500
|
29.047
|
12.639
|
51.885
|
48.115
|
13.525
|
15.521
|
46.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
414.597
|
12.993
|
24.300
|
17.437
|
16.153
|
6.806
|
26.547
|
9.075
|
61.879
|
1724.959
|
1012.211
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
— | — | — |
-1.234
|
1.975
|
— |
1.690
|
-4.922
|
— |
-6.167
|
— | — |