Hg_chrom3_TN10mRNA_5063
Organism: Heterodera glycines Gene Locus: chr3:4248714-4263712 Feature type: polypeptideProtein Sequence
Length: 2,087
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 1.281 | 0.941 | 0.397 | 1.39 | 1.487 | 0.685 | 1.198 | 1.235 | 1.36 | 1.176 | 1.832 | 1.291 | 0.534 | 1.281 | 0.76 | 0.77 | 0.661 | 1.548 | 0.536 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4795
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKRR,QKLRKSHRKKK,KKGWQMLEKYGKFRRD,KKLRQKWDGMEKRAQR,KRKTAEMAKHFREKLK,RKNSPAENGEKRARRF,KKIANMNMKVPKKLIK,RKNESGTWARRKRARSR,KRKKKKKKGGMKKKADK,KRRTNGILAFLCSKKKLN,KKLEENAQLENEIIKMRKF,KKYSNTRAQFLKYLAKWKK
|
— | — |
42-73
|
0.997
|
— | — |
0.000
|
— | — |
0.585
|
0.093
|
0.009
|
0.587
|
0.101
|
0.090
|
0.085
|
0.005
|
0.082
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001190
|
1.000
|
4.000
|
Hsc_gene_8638.t1;Hsc_gene_8638.t2;Hsc_gene_8638.t3;Hsc_gene_8638.t4
|
— | — | — |
XP_008214128.1 LOW QUALITY PROTEIN: poly(A) polymerase alpha-like, partial [Nasonia vitripennis]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.740|GO:0110165_0.732|GO:0005622_0.686|GO:0016020_0.643|GO:0043226_0.624|GO:0008150_0.616|GO:0043229_0.594|GO:0003674_0.558|GO:0043227_0.549|GO:0043231_0.545|GO:0009987_0.513
|
IPR007012+1917-2066+|IPR043519+1715-1856_1718-1876+
|
— |
PF04928+1917-2066+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1741-2071+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;138-284;1287-1425;1462-1601
|
4.000
|
21-137;285-1286;1426-1461;1602-2087
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.632
|
239974.180
|
8.330
|
36.000
|
29.947
|
10.877
|
51.270
|
48.730
|
16.435
|
13.512
|
42.214
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
1082.496
|
160.543
|
295.537
|
316.527
|
125.994
|
101.497
|
120.079
|
119.733
|
2028.984
|
2749.214
|
2440.544
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
0.842
|
0.207
|
-1.362
|
— | — | — | — | — | — |
-4.008
|
— | — |
No JSON data available for plots.