Hg_chrom3_TN10mRNA_5069
Organism: Heterodera glycines Gene Locus: chr3:4299026-4303108 Feature type: polypeptideProtein Sequence
Length: 829
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.547 | 0.926 | 0.965 | 0.79 | 0.885 | 0.866 | 0.747 | 1.327 | 1.689 | 1.565 | 0.804 | 1.774 | 1.608 | 0.742 | 0.886 | 0.982 | 0.791 | 1.334 | 0.742 | 0.922 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4801
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.820
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
KRRR
|
— | — | — | — |
1-25
|
0.927
|
0.995
|
7.000
|
7.000
|
0.247
|
0.117
|
0.026
|
0.111
|
0.591
|
0.546
|
0.588
|
0.054
|
0.504
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007485
|
1.000
|
1.000
|
Hsc_gene_13162.t1
|
Hsc_gene_13162.t1
|
— |
A3QM97.1 Metal transporter cnnm-1 [Caenorhabditis elegans]
|
KAH7728162.1 Protein C52D10.12 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0010960
|
GO:0005575_0.864|GO:0110165_0.821|GO:0016020_0.778|GO:0008150_0.767|GO:0071944_0.744|GO:0005886_0.742
|
IPR000644+420-483_422-490+|IPR001841+726-794_726-795+|IPR002550+158-334_168-325+|IPR013083+716-807+|IPR044751+350-480+|IPR045095+163-508+|IPR046342+333-490_340-483+
|
SM00184+726-794+
|
PF00571+420-483+CBS_domain|PF01595+168-325+Cyclin_M_transmembrane_N-terminal_domain
|
G3DSA:3.10.580.10:FF:000006+333-490+DUF21_and_CBS_domain_protein
|
PTHR12064+163-508+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-829
|
6n7e_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.587
|
93515.000
|
6.718
|
3.000
|
22.919
|
12.545
|
41.978
|
58.022
|
12.304
|
10.615
|
46.924
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1753.428
|
1684.991
|
1639.601
|
1590.983
|
1955.505
|
2014.440
|
2096.950
|
1905.237
|
1399.652
|
1788.618
|
1621.919
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.269
|
-0.220
|
— |
0.266
|
— | — | — |
0.280
|
— | — | — | — | — |