Hg_chrom3_TN10mRNA_5070
Organism: Heterodera glycines Gene Locus: chr3:4304450-4305437 Feature type: polypeptideProtein Sequence
Length: 72
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 0.969 | 0.505 | 0.958 | 1.389 | 1.781 | 0.992 | 0.0 | 1.235 | 1.314 | 1.052 | 2.451 | 1.543 | 0.534 | 1.984 | 0.595 | 1.138 | 0.631 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4802
|
— | — |
2.111
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RKATKGSIELPKKSRT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.471
|
0.468
|
0.158
|
0.390
|
0.101
|
0.042
|
0.116
|
0.166
|
0.077
|
0.261
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003533
|
2.000
|
1.000
|
Hsc_gene_13116.t1
|
Hsc_gene_13116.t1
|
— |
Q8NFJ9.1 Bardet-Biedl syndrome 1 protein [Homo sapiens]
|
KAI1726720.1 ciliary BBSome complex subunit 1 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0034464|GO:1905515
|
GO:0005575_0.924|GO:0008150_0.922|GO:0110165_0.914|GO:0009987_0.861|GO:0005622_0.806|GO:0003674_0.803|GO:0005488_0.803|GO:0005515_0.791|GO:0016020_0.784|GO:0043226_0.756|GO:0032501_0.751|GO:0043229_0.746|GO:0071840_0.735|GO:0051179_0.732|GO:0016043_0.729|GO:0006810_0.720|GO:0051234_0.720|GO:0043227_0.709|GO:0005102_0.705|GO:0051641_0.705|GO:0006996_0.697|GO:0051649_0.694|GO:0033036_0.691|GO:0070727_0.690|GO:0044085_0.688|GO:0008104_0.687|GO:0022607_0.685|GO:0042592_0.681|GO:0046907_0.680|GO:0016192_0.678|GO:0033365_0.677|GO:0051640_0.677|GO:0051656_0.677|GO:0007010_0.674|GO:0000226_0.670|GO:0001578_0.670|GO:0001894_0.670|GO:0001895_0.670|GO:0005886_0.670|GO:0005929_0.670|GO:0006903_0.670|GO:0007017_0.670|GO:0007018_0.670|GO:0010970_0.670|GO:0030030_0.670|GO:0030031_0.670|GO:0030705_0.670|GO:0030990_0.670|GO:0031503_0.670|GO:0032991_0.670|GO:0035082_0.670|GO:0035735_0.670|GO:0042073_0.670|GO:0042995_0.670|GO:0044782_0.670|GO:0048193_0.670|GO:0048199_0.670|GO:0048871_0.670|GO:0051648_0.670|GO:0051650_0.670|GO:0060249_0.670|GO:0060271_0.670|GO:0061512_0.670|GO:0070925_0.670|GO:0071944_0.670|GO:0097712_0.670|GO:0098590_0.670|GO:0099111_0.670|GO:0120025_0.670|GO:0120031_0.670|GO:0120036_0.670|GO:1905349_0.670|GO:1905515_0.670|GO:0043228_0.619|GO:0043232_0.619|GO:0065007_0.552|GO:0005856_0.545|GO:0015630_0.545|GO:0005813_0.540|GO:0005814_0.540|GO:0005815_0.540|GO:0034464_0.540|GO:0050789_0.534|GO:0050794_0.519|GO:0050896_0.482|GO:0005737_0.464|GO:0051716_0.447|GO:0006950_0.410|GO:0042221_0.383|GO:0032502_0.381|GO:0008152_0.380|GO:0044237_0.378|GO:0048856_0.378|GO:0044238_0.375|GO:0007275_0.366|GO:0030154_0.366|GO:0048869_0.366|GO:0065008_0.361|GO:0001664_0.358|GO:0048731_0.357|GO:0022414_0.355|GO:0071705_0.355|GO:0008283_0.354|GO:0003008_0.353|GO:0033554_0.351|GO:0045184_0.351
|
IPR028784+1-66+
|
— | — | — |
PTHR20870+1-66+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
71-72
|
1.000
|
1-70
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
8129.450
|
10.201
|
4.000
|
27.778
|
5.556
|
50.000
|
50.000
|
16.667
|
11.111
|
43.056
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
9.982
|
3.340
|
2.197
|
1.803
|
0.912
|
2.600
|
1.420
|
4.165
|
0.000
|
37.507
|
21.433
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
-6.053
|
— |
-5.169
|
— | — |
No JSON data available for plots.