Hg_chrom3_TN10mRNA_5071
Organism: Heterodera glycines Gene Locus: chr3:4306241-4308540 Feature type: polypeptideProtein Sequence
Length: 421
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.05 | 1.271 | 0.993 | 0.41 | 1.386 | 0.792 | 0.792 | 1.069 | 1.161 | 1.316 | 0.936 | 1.118 | 1.781 | 0.502 | 0.776 | 1.018 | 0.467 | 0.972 | 1.462 | 1.327 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4803
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.580
|
0.127
|
0.035
|
0.661
|
0.184
|
0.247
|
0.115
|
0.009
|
0.135
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001187
|
2.000
|
3.000
|
Hsc_gene_25836.t1;Hsc_gene_25836.t2;Hsc_gene_5335.t1
|
Hsc_gene_5335.t1
|
— |
A9JRD8.2 BTB/POZ domain-containing protein 6-A [Danio rerio]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.745|GO:0110165_0.745|GO:0008150_0.668|GO:0005622_0.664|GO:0005737_0.589|GO:0009987_0.540|GO:0043226_0.511|GO:0043229_0.503
|
IPR000210+3-105_8-85_8-116+|IPR002083+283-416_288-418+|IPR008974+275-421+|IPR011333+1-142_2-105+|IPR011705+119-230_123-226+
|
SM00225+8-116+|SM00875+119-230+
|
PF00651+3-105+BTB/POZ_domain|PF07707+123-226+BTB_And_C-terminal_Kelch|PF22486+288-418+MATH_domain
|
— |
PTHR45774+1-248+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-421
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
47666.990
|
4.880
|
-11.500
|
25.891
|
14.964
|
44.418
|
55.582
|
12.114
|
13.777
|
46.793
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
1208.514
|
17.178
|
32.800
|
37.185
|
97.107
|
58.842
|
118.422
|
51.045
|
3.775
|
5129.700
|
2932.875
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
0.978
|
— |
1.355
|
-0.709
|
1.019
|
— |
1.358
|
-7.572
|
— |
-2.715
|
— | — |
No JSON data available for plots.