Hg_chrom3_TN10mRNA_5080
Organism: Heterodera glycines Gene Locus: chr3:4375737-4378924 Feature type: polypeptideProtein Sequence
Length: 310
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.013 | 0.975 | 0.88 | 1.446 | 1.237 | 1.406 | 0.461 | 0.968 | 1.219 | 1.395 | 1.369 | 1.518 | 1.254 | 0.682 | 1.251 | 0.968 | 0.74 | 0.538 | 0.744 | 0.569 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4812
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.843
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKR,KKYYLEENELDGETKDKMK,KRIRFRKSQLKGIEKGAKKEPKRE
|
15-45
|
0.948
|
24-44
|
0.992
|
— | — |
0.000
|
— | — |
0.828
|
0.161
|
0.004
|
0.458
|
0.024
|
0.023
|
0.051
|
0.003
|
0.037
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007488
|
1.000
|
1.000
|
Hsc_gene_5323.t1
|
Hsc_gene_5323.t1
|
— |
Q7PMT1.2 Homeobox protein extradenticle [Anopheles gambiae]
|
KAI3415440.1 Pre-B-cell leukemia transcription factor 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.870|GO:0005575_0.790|GO:0009987_0.779|GO:0110165_0.775|GO:0003674_0.765|GO:0005622_0.762|GO:0005488_0.737|GO:0043226_0.711|GO:0043229_0.698|GO:0065007_0.682|GO:0050789_0.669|GO:0050794_0.650|GO:0016020_0.639|GO:0008152_0.614|GO:0044238_0.614|GO:0043170_0.612|GO:0044237_0.606|GO:0009058_0.601|GO:0009059_0.595|GO:0044249_0.595|GO:0097159_0.590|GO:0010467_0.588|GO:0006139_0.578|GO:0043227_0.575|GO:0019222_0.574|GO:0003676_0.573|GO:0031323_0.572|GO:0060255_0.567|GO:0043231_0.565|GO:0080090_0.565|GO:0090304_0.565|GO:0034654_0.563|GO:0009889_0.554|GO:0016070_0.554|GO:0031326_0.554|GO:0141187_0.553|GO:0010556_0.548|GO:0032774_0.545|GO:0010468_0.543|GO:0019219_0.526|GO:0006351_0.524|GO:0032501_0.522|GO:0006355_0.520|GO:0051252_0.520|GO:2001141_0.520|GO:0003677_0.517|GO:0032502_0.508|GO:0048856_0.508
|
IPR001356+229-292_231-296_232-293+|IPR008422+250-288+|IPR009057+231-295+|IPR017970+267-290+|IPR050224+60-291+
|
SM00389+231-296+
|
PF05920+250-288+Homeobox_KN_domain
|
— |
PTHR11850+60-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
297-310
|
1.000
|
1-296
|
4uus_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
35294.790
|
8.661
|
12.000
|
29.355
|
9.355
|
50.323
|
49.677
|
17.097
|
12.258
|
44.194
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
308.758
|
7.374
|
85.407
|
21.979
|
7.206
|
365.738
|
1448.653
|
282.382
|
577.614
|
85.578
|
296.451
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.308
|
1.441
|
-1.849
|
-1.636
|
5.673
|
1.997
|
-0.476
|
2.501
|
— |
-4.535
|
— | — | — |
No JSON data available for plots.