Hg_chrom3_TN10mRNA_5081
Organism: Heterodera glycines Gene Locus: chr3:4379225-4380564 Feature type: polypeptideProtein Sequence
Length: 208
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.006 | 1.118 | 0.962 | 0.663 | 1.442 | 0.863 | 0.744 | 2.885 | 0.855 | 0.91 | 1.093 | 1.131 | 0.935 | 0.74 | 1.276 | 0.824 | 0.473 | 1.238 | 2.589 | 0.566 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4813
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KPKKKKVAQKM,RRSSIDVEVVAEEKPKKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.557
|
0.329
|
0.052
|
0.489
|
0.119
|
0.106
|
0.062
|
0.057
|
0.176
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007489
|
1.000
|
1.000
|
Hsc_gene_5322.t1
|
Hsc_gene_5322.t1
|
— |
P34328.1 Heat shock protein Hsp-12.2 [Caenorhabditis elegans]
|
KAI1717322.1 hsp20/alpha crystallin family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.824|GO:0005575_0.819|GO:0110165_0.818|GO:0005622_0.760|GO:0003674_0.684|GO:0005737_0.670|GO:0009987_0.669|GO:0050896_0.563|GO:0005488_0.557|GO:0065007_0.542|GO:0050789_0.531|GO:0043226_0.509
|
IPR001436+15-135_32-52_69-88_91-112_121-136+|IPR002068+19-127_33-126+|IPR008978+18-144_19-121+
|
— |
PF00011+33-126+Hsp20/alpha_crystallin_family
|
— |
PTHR45640+15-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-208
|
2wj5_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
23792.880
|
7.305
|
5.000
|
33.173
|
14.423
|
50.000
|
50.000
|
19.231
|
13.942
|
47.596
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
83.391
|
25.868
|
84.433
|
745.052
|
44.426
|
7.021
|
20.062
|
37.104
|
4.466
|
0.000
|
1.914
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.477
|
4.708
|
3.252
|
-4.101
|
-2.646
|
1.522
|
2.310
|
— | — |
7.568
|
— | — | — |
No JSON data available for plots.