Hg_chrom3_TN10mRNA_5082
Organism: Heterodera glycines Gene Locus: chr3:4383208-4388710 Feature type: polypeptideProtein Sequence
Length: 383
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.123 | 1.214 | 0.902 | 0.18 | 1.305 | 0.87 | 0.777 | 0.914 | 0.928 | 1.305 | 1.424 | 2.304 | 1.958 | 0.854 | 0.373 | 0.821 | 0.642 | 1.029 | 0.201 | 0.845 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4814
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.889
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.358
|
0.279
|
0.062
|
0.658
|
0.154
|
0.160
|
0.142
|
0.087
|
0.187
|
0.899
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007490
|
1.000
|
1.000
|
Hsc_gene_5321.t3
|
Hsc_gene_5321.t1;Hsc_gene_5321.t2;Hsc_gene_5321.t3
|
— |
P35237.3 Serpin B6 [Homo sapiens]
|
KAH7723002.1 ANISERP protein [Aphelenchus avenae]
|
No
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.774|GO:0110165_0.767|GO:0008150_0.759|GO:0003674_0.637|GO:0005622_0.586|GO:0009987_0.570|GO:0016020_0.569|GO:0065007_0.548|GO:0005488_0.543|GO:0050789_0.532|GO:0008152_0.529|GO:0005737_0.519
|
IPR000215+22-370+|IPR023796+22-378_28-383+|IPR036186+14-379+|IPR042178+26-348+|IPR042185+185-377+
|
SM00093+28-383+
|
PF00079+22-378+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+22-370+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-383
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.579
|
42536.980
|
5.954
|
-2.500
|
25.849
|
12.010
|
44.125
|
55.875
|
13.055
|
12.794
|
47.781
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkred
|
6415.448
|
2399.410
|
4120.068
|
1300.298
|
7211.329
|
21510.542
|
4844.273
|
10528.832
|
766.349
|
8024.793
|
4914.031
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
-1.021
|
-1.556
|
2.439
|
1.594
|
-2.143
|
-1.131
|
-0.980
|
-3.503
|
— | — | — | — |
No JSON data available for plots.