Hg_chrom3_TN10mRNA_5087
Organism: Heterodera glycines Gene Locus: chr3:4400611-4401693 Feature type: polypeptideProtein Sequence
Length: 223
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.147 | 0.73 | 1.549 | 0.0 | 1.868 | 1.495 | 0.587 | 1.121 | 1.096 | 1.394 | 1.563 | 2.374 | 0.498 | 0.604 | 1.281 | 0.577 | 0.368 | 0.544 | 0.69 | 0.791 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4818
|
— | — |
1.667
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKQKQIANELKKKVE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.558
|
0.286
|
0.041
|
0.681
|
0.049
|
0.051
|
0.065
|
0.008
|
0.092
|
0.255
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000716
|
5.000
|
1.000
|
Hsc_gene_25497.t1
|
— | — |
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
APO36911.1 14-3-3 protein [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.908|GO:0005575_0.839|GO:0110165_0.837|GO:0009987_0.778|GO:0005622_0.753|GO:0003674_0.705|GO:0005488_0.692|GO:0043226_0.644|GO:0065007_0.644|GO:0005737_0.621|GO:0050789_0.610|GO:0005515_0.592|GO:0016020_0.588|GO:0051179_0.540|GO:0050794_0.531|GO:0043227_0.507
|
IPR000308+1-50_4-213_31-60_46-221_182-211+|IPR023410+5-222_12-209+|IPR036815+1-221_4-210+
|
SM00101+5-222+
|
PF00244+12-209+14-3-3_protein
|
— |
PTHR18860+4-213+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26;204-223
|
1.000
|
27-203
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.763
|
25639.100
|
5.287
|
-4.500
|
38.565
|
7.623
|
53.812
|
46.188
|
18.834
|
19.731
|
39.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
199.447
|
1.230
|
5.305
|
3.068
|
13.130
|
386.832
|
8.527
|
838.712
|
1.855
|
399.889
|
229.303
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.881
|
— | — |
2.069
|
4.892
|
-5.493
|
1.003
|
-6.471
|
-8.408
|
— |
-4.680
|
— | — |
No JSON data available for plots.