Hg_chrom3_TN10mRNA_5089
Organism: Heterodera glycines Gene Locus: chr3:4407795-4410043 Feature type: polypeptideProtein Sequence
Length: 93
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.875 | 1.25 | 0.391 | 0.371 | 0.358 | 0.551 | 0.896 | 0.538 | 0.956 | 0.581 | 1.792 | 1.265 | 0.896 | 1.447 | 0.439 | 2.151 | 1.234 | 0.163 | 0.0 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4820
|
— | — |
1.778
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cell_membrane
|
— |
RKSK,KPAAPPSTKEKKHKGSK
|
1-27
|
0.981
|
— | — | — | — |
0.001
|
— | — |
0.270
|
0.183
|
0.008
|
0.294
|
0.044
|
0.142
|
0.109
|
0.002
|
0.607
|
0.165
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000549
|
7.000
|
0.000
|
0.000
|
— | — | — | — |
EUA73208
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
53-93
|
1.000
|
1-52
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.862
|
9565.820
|
10.661
|
9.500
|
19.355
|
7.527
|
49.462
|
50.538
|
15.054
|
4.301
|
63.441
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
50.759
|
27.881
|
43.497
|
17.964
|
14.148
|
56.636
|
22.011
|
115.306
|
61.655
|
64.289
|
63.160
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.772
|
-1.164
|
— |
2.021
|
-1.352
|
0.924
|
-2.247
|
— | — | — | — | — |
No JSON data available for plots.