Hg_chrom3_TN10mRNA_5093
Organism: Heterodera glycines Gene Locus: chr3:4423583-4424181 Feature type: polypeptideProtein Sequence
Length: 182
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.511 | 0.894 | 1.199 | 0.568 | 0.824 | 1.832 | 0.458 | 1.374 | 1.954 | 1.04 | 0.916 | 1.939 | 0.611 | 1.162 | 1.57 | 2.041 | 0.721 | 0.416 | 0.0 | 0.485 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4824
|
— | — |
2.667
|
3.000
|
4.000
|
1.000
|
3.000
|
2.000
|
3.000
|
5.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRPR,KRSR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.904
|
0.175
|
0.226
|
0.332
|
0.020
|
0.028
|
0.038
|
0.096
|
0.066
|
0.236
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000040
|
1.000
|
24.000
|
Hsc_gene_11403.t1;Hsc_gene_11562.t1;Hsc_gene_14337.t1;Hsc_gene_14668.t1;Hsc_gene_14679.t1;Hsc_gene_15153.t1;Hsc_gene_15153.t2;Hsc_gene_15279.t1;Hsc_gene_15312.t1;Hsc_gene_15561.t1;Hsc_gene_15809.t1;Hsc_gene_16155.t1;Hsc_gene_16769.t1;Hsc_gene_18164.t1;Hsc_gene_23240.t1;Hsc_gene_25575.t1;Hsc_gene_25852.t1;Hsc_gene_26434.t1;Hsc_gene_3038.t1;Hsc_gene_4603.t1;Hsc_gene_6063.t1;Hsc_gene_6071.t1;Hsc_gene_8963.t1;Hsc_gene_9020.t1
|
Hsc_gene_14679.t1
|
— | — |
KAK6030280.1 endonuclease/exonuclease/phosphatase family protein, partial [Ostertagia ostertagi]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-25;144-182
|
1.000
|
26-143
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.928
|
20482.190
|
9.164
|
6.500
|
28.022
|
6.593
|
57.692
|
42.308
|
16.484
|
11.538
|
47.802
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.