Hg_chrom3_TN10mRNA_5096
Organism: Heterodera glycines Gene Locus: chr3:4433464-4439154 Feature type: polypeptideProtein Sequence
Length: 496
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.797 | 0.985 | 1.283 | 0.556 | 1.075 | 0.879 | 0.696 | 0.504 | 0.762 | 1.607 | 0.947 | 1.779 | 1.12 | 0.853 | 1.481 | 1.152 | 0.826 | 1.069 | 0.775 | 0.593 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4827
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRKL
|
5-35
|
0.975
|
12-42
|
0.981
|
— | — |
0.000
|
— | — |
0.146
|
0.883
|
0.084
|
0.157
|
0.035
|
0.021
|
0.019
|
0.026
|
0.030
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001191
|
1.000
|
4.000
|
Hsc_gene_16966.t1;Hsc_gene_2916.t1;Hsc_gene_633.t1;Hsc_gene_633.t2
|
Hsc_gene_25496.t1;Hsc_gene_2915.t1;Hsc_gene_2916.t1;Hsc_gene_633.t1;Hsc_gene_633.t2;Hsc_gene_634.t1
|
— |
Q95XR2.1 5-methylcytosine rRNA methyltransferase nsun-4 [Caenorhabditis elegans]
|
KAI1702135.1 16S rRNA methyltransferase rsmB/F domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001510|GO:0008168|GO:0008173
|
GO:0008150_0.903|GO:0009987_0.821|GO:0003674_0.752|GO:0005575_0.732|GO:0110165_0.730|GO:0008152_0.674|GO:0044238_0.669|GO:0043170_0.661|GO:0044237_0.661|GO:0005622_0.660|GO:0009058_0.658|GO:0044249_0.646|GO:0009059_0.644|GO:0010467_0.633|GO:0006139_0.630|GO:0090304_0.622|GO:0034654_0.620|GO:0141187_0.613|GO:0016070_0.612|GO:0032774_0.612|GO:0043412_0.609|GO:0016020_0.596|GO:0006396_0.591|GO:0001510_0.584|GO:0009451_0.584|GO:0032259_0.584|GO:0043414_0.584|GO:0043226_0.576|GO:0043229_0.551|GO:0071840_0.533|GO:0003824_0.527|GO:0043227_0.513|GO:0016740_0.501
|
IPR001678+188-495+|IPR023267+287-297_360-372_412-428+|IPR029063+264-494_268-496+|IPR049560+276-435+|IPR052322+45-496+
|
— |
PF01189+276-435+16S_rRNA_methyltransferase_RsmB/F
|
G3DSA:3.40.50.150:FF:000055+268-496+5-methylcytosine_rRNA_methyltransferase_NSUN4
|
PTHR46955+45-496+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
107-173
|
2.000
|
1-106;174-496
|
9hch_x
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
55621.690
|
7.245
|
2.500
|
28.024
|
8.065
|
48.790
|
51.210
|
14.516
|
13.508
|
50.202
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
874.024
|
880.459
|
950.366
|
1102.559
|
1259.914
|
1003.322
|
1238.406
|
748.713
|
592.891
|
685.286
|
645.688
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.119
|
0.188
|
0.323
|
0.160
|
-0.314
|
0.314
|
-0.526
|
0.868
|
— | — | — | — | — |
No JSON data available for plots.