Hg_chrom3_TN10mRNA_5097
Organism: Heterodera glycines Gene Locus: chr3:4441019-4442328 Feature type: polypeptideProtein Sequence
Length: 245
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.187 | 0.664 | 1.484 | 0.0 | 1.701 | 1.57 | 0.534 | 1.02 | 1.179 | 1.269 | 1.546 | 2.161 | 0.454 | 0.549 | 1.583 | 0.641 | 0.535 | 0.618 | 0.628 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4828
|
— | — |
1.778
|
2.000
|
2.000
|
1.000
|
3.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKQKQIANELKKKVE,RRIITSTQQRPTLTKKQKQ
|
45-65
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.631
|
0.403
|
0.047
|
0.704
|
0.058
|
0.072
|
0.084
|
0.009
|
0.105
|
0.332
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000716
|
5.000
|
1.000
|
Hsc_gene_25497.t1
|
Hsc_gene_25497.t1;Hsc_gene_2912.t1;Hsc_gene_2914.t1;Hsc_gene_635.t1
|
— |
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
APO36911.1 14-3-3 protein [Meloidogyne incognita]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.886|GO:0005575_0.857|GO:0110165_0.856|GO:0009987_0.782|GO:0005622_0.773|GO:0003674_0.732|GO:0005488_0.721|GO:0043226_0.668|GO:0005737_0.634|GO:0065007_0.625|GO:0005515_0.610|GO:0016020_0.607|GO:0050789_0.593|GO:0050794_0.540|GO:0051179_0.536|GO:0043227_0.533
|
IPR000308+1-243_4-235_37-66_84-108_115-137_148-174_204-233+|IPR023410+5-244_12-231+|IPR036815+1-243_4-232+
|
SM00101+5-244+
|
PF00244+12-231+14-3-3_protein
|
— |
PTHR18860+4-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;221-245
|
1.000
|
19-220
|
9mmr_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
28163.030
|
7.000
|
1.500
|
38.367
|
6.939
|
55.102
|
44.898
|
20.000
|
18.367
|
40.408
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
417.686
|
4.792
|
3.393
|
11.909
|
49.125
|
1783.076
|
18.256
|
1971.406
|
1.855
|
385.253
|
220.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.181
|
1.926
|
2.018
|
5.194
|
-6.601
|
— |
-6.609
|
-8.350
|
— | — | — | — |
No JSON data available for plots.