Hg_chrom3_TN10mRNA_5114
Organism: Heterodera glycines Gene Locus: chr3:4502414-4506612 Feature type: polypeptideProtein Sequence
Length: 723
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 1.962 | 0.704 | 0.811 | 1.176 | 1.099 | 0.757 | 0.968 | 1.352 | 1.196 | 0.985 | 1.546 | 1.998 | 0.878 | 0.536 | 0.889 | 0.771 | 0.713 | 0.426 | 0.895 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4844
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.759
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— | — | — |
16-42
|
0.999
|
1-29
|
0.704
|
1.000
|
0.000
|
0.000
|
0.303
|
0.258
|
0.123
|
0.431
|
0.221
|
0.241
|
0.247
|
0.163
|
0.315
|
0.758
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000199
|
9.000
|
2.000
|
Hsc_gene_15846.t1;Hsc_gene_15846.t2
|
Hsc_gene_15846.t1;Hsc_gene_15846.t2
|
— |
Q4R3G2.1 Serpin B6 [Macaca fascicularis]
|
KAI3412091.1 SERPIN [Globodera pallida]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0005575_0.788|GO:0110165_0.788|GO:0008150_0.764|GO:0003674_0.619|GO:0009987_0.591|GO:0016020_0.551|GO:0005622_0.544|GO:0065007_0.511|GO:0005488_0.507|GO:0005737_0.506
|
IPR000215+356-720+|IPR023796+357-720_363-722+|IPR036186+351-720+|IPR042178+372-664+|IPR042185+515-715+
|
SM00093+363-722+
|
PF00079+357-720+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+356-720+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-723
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
80803.040
|
5.796
|
-6.000
|
21.992
|
12.725
|
45.643
|
54.357
|
11.065
|
10.927
|
49.239
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
50.377
|
2.608
|
7.059
|
4.166
|
6.561
|
76.947
|
8.523
|
155.434
|
0.000
|
122.413
|
69.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
3.555
|
-3.165
|
0.911
|
-4.048
|
-7.710
|
— | — | — | — |