Hg_chrom3_TN10mRNA_5117
Organism: Heterodera glycines Gene Locus: chr3:4512116-4515912 Feature type: polypeptideProtein Sequence
Length: 349
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.666 | 1.133 | 0.677 | 0.494 | 2.101 | 2.865 | 0.648 | 0.716 | 1.401 | 1.007 | 2.04 | 2.023 | 0.716 | 0.386 | 0.994 | 0.778 | 0.517 | 0.434 | 0.441 | 0.421 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4847
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRR,RKCGLEKQQKQLQKRREE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.729
|
0.120
|
0.012
|
0.676
|
0.094
|
0.099
|
0.040
|
0.002
|
0.084
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007497
|
1.000
|
1.000
|
Hsc_gene_651.t1
|
— | — |
P69310.1 Ubiquitin [Avena sativa]
|
XP_001017626.1 ubiquitin/ribosomal fusion protein, putative [Tetrahymena thermophila SB210];EAR97381.1 ubiquitin/ribosomal fusion protein, putative [Tetrahymena thermophila SB210]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.939|GO:0110165_0.934|GO:0005622_0.922|GO:0043226_0.847|GO:0043229_0.832|GO:0016020_0.752|GO:0005737_0.745|GO:0043227_0.700|GO:0043231_0.662|GO:0003674_0.604|GO:0043228_0.590|GO:0043232_0.590|GO:0008150_0.536|GO:0032991_0.520|GO:0005829_0.515
|
IPR000626+274-345_276-346+|IPR019956+284-304_305-325_326-347+|IPR029071+269-346+|IPR050158+274-345+
|
SM00213+274-345+
|
PF00240+276-346+Ubiquitin_family
|
— |
PTHR10666+274-345+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-265
|
1.000
|
266-349
|
2kx0_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.676
|
40475.090
|
9.226
|
9.500
|
36.103
|
6.017
|
60.745
|
39.255
|
19.771
|
16.332
|
34.670
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
179.361
|
71.354
|
158.619
|
153.440
|
285.104
|
144.670
|
457.583
|
62.447
|
20.663
|
269.253
|
162.714
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
0.968
|
— |
0.863
|
-0.965
|
1.672
|
-1.322
|
3.018
|
— | — | — | — | — |
No JSON data available for plots.