Hg_chrom3_TN10mRNA_5119
Organism: Heterodera glycines Gene Locus: chr3:4535111-4539567 Feature type: polypeptideProtein Sequence
Length: 675
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.085 | 0.999 | 0.943 | 0.409 | 1.284 | 1.292 | 0.723 | 0.815 | 0.428 | 0.981 | 0.471 | 1.569 | 0.905 | 2.023 | 0.967 | 0.931 | 1.433 | 1.212 | 0.912 | 0.479 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4849
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.787
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.325
|
0.344
|
0.068
|
0.548
|
0.376
|
0.565
|
0.481
|
0.009
|
0.318
|
0.350
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003536
|
2.000
|
1.000
|
Hsc_gene_6145.t1
|
Hsc_gene_25081.t1;Hsc_gene_5382.t1
|
— |
Q22943.2 Platelet-activating factor acetylhydrolase homolog 2 [Caenorhabditis elegans]
|
KAI1718798.1 platelet-activating factor acetylhydrolase, isoform II domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.846|GO:0003674_0.765|GO:0005575_0.613|GO:0110165_0.608|GO:0016020_0.528|GO:0005622_0.523
|
IPR029058+64-562_94-431+
|
— |
PF03403+69-549+Platelet-activating_factor_acetylhydrolase,_isoform_II
|
— |
PTHR10272+65-562+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-86;220-299;426-481;521-675
|
3.000
|
87-219;300-425;482-520
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
73210.950
|
4.470
|
-28.500
|
22.370
|
7.704
|
46.963
|
53.037
|
9.481
|
12.889
|
59.852
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
997.683
|
288.290
|
447.004
|
916.338
|
927.977
|
1001.221
|
1012.669
|
1762.269
|
44.214
|
1948.287
|
1132.256
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.404
|
1.531
|
1.144
|
— | — | — |
0.700
|
-0.652
|
— |
4.569
|
— | — | — |
No JSON data available for plots.