Hg_chrom3_TN10mRNA_5120
Organism: Heterodera glycines Gene Locus: chr3:4540788-4545192 Feature type: polypeptideProtein Sequence
Length: 514
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.882 | 0.905 | 1.486 | 0.738 | 0.811 | 1.646 | 0.903 | 0.778 | 1.038 | 0.894 | 0.943 | 2.06 | 1.243 | 0.748 | 0.675 | 1.056 | 1.116 | 0.973 | 1.497 | 0.744 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4850
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_654
|
— |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
6-29
|
0.947
|
— | — | — | — |
0.130
|
— | — |
0.105
|
0.095
|
0.025
|
0.212
|
0.504
|
0.574
|
0.506
|
0.007
|
0.106
|
0.743
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007498
|
1.000
|
1.000
|
Hsc_gene_654.t1
|
— | — |
Q21966.1 Aspartic protease 4 [Caenorhabditis elegans]
|
KAI1725839.1 eukaryotic aspartyl protease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004190|GO:0006508
|
GO:0005575_0.808|GO:0110165_0.805|GO:0008150_0.803|GO:0016020_0.648|GO:0003674_0.615|GO:0005622_0.583|GO:0009987_0.551|GO:0043226_0.549|GO:0005737_0.547|GO:0071944_0.540|GO:0043229_0.529|GO:0043227_0.522|GO:0005886_0.514|GO:0043231_0.512
|
IPR001461+59-453_135-155_283-296_335-346_426-441+|IPR001969+144-155_335-346+|IPR021109+75-453_133-262_309-434+|IPR033121+129-450_132-452+
|
— |
PF00026+132-452+Eukaryotic_aspartyl_protease
|
G3DSA:2.40.70.10:FF:000004+123-291+Pepsin_A|G3DSA:2.40.70.10:FF:000044+292-452+Lysosomal_aspartic_protease
|
PTHR47966+59-453+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
447-514
|
1.000
|
1-446
|
5n7q_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.526
|
56930.080
|
4.734
|
-14.000
|
24.125
|
10.506
|
48.638
|
51.362
|
11.089
|
13.035
|
53.891
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3079.315
|
8.965
|
49.186
|
500.513
|
2243.678
|
2483.186
|
22571.578
|
369.449
|
507.530
|
2506.398
|
1649.741
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.223
|
5.662
|
3.453
|
2.133
|
— |
3.196
|
-2.863
|
6.079
|
— | — | — | — | — |
No JSON data available for plots.