Hg_chrom3_TN10mRNA_5121
Organism: Heterodera glycines Gene Locus: chr3:4548889-4550536 Feature type: polypeptideProtein Sequence
Length: 217
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.179 | 0.857 | 0.838 | 1.112 | 0.538 | 1.418 | 0.494 | 1.843 | 1.126 | 0.872 | 0.349 | 1.084 | 1.28 | 1.684 | 1.693 | 1.514 | 1.133 | 0.838 | 0.709 | 0.136 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4851
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
chloroplast
|
— | — | — |
42-68
|
0.972
|
1-22
|
0.801
|
0.976
|
0.000
|
0.000
|
0.382
|
0.137
|
0.042
|
0.545
|
0.044
|
0.107
|
0.108
|
0.014
|
0.069
|
0.219
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000495
|
6.000
|
1.000
|
Hsc_gene_7626.t1
|
— | — |
Q9Y818.1 Ubiquitin-conjugating enzyme E2 15 [Schizosaccharomyces pombe 972h-]
|
KAI3412015.1 ubiquitin-conjugating enzyme E2 G1 [Globodera pallida]
|
KAI8912638
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.898|GO:0005575_0.777|GO:0110165_0.772|GO:0003674_0.769|GO:0008152_0.716|GO:0043170_0.716|GO:0044238_0.705|GO:0019538_0.665|GO:0005622_0.649|GO:0009987_0.636|GO:0003824_0.627|GO:0140096_0.619|GO:0016740_0.615|GO:0016746_0.611|GO:0016755_0.609|GO:0019787_0.609|GO:0016020_0.594|GO:0004842_0.588|GO:0043226_0.547|GO:0009056_0.527|GO:0005737_0.517|GO:0043229_0.502
|
IPR000608+115-195_118-202+|IPR016135+107-204_116-200+|IPR023313+117-132+|IPR050113+115-201+
|
SM00212+69-202+
|
PF00179+115-195+Ubiquitin-conjugating_enzyme
|
— |
PTHR24067+115-201+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
67-217
|
1.000
|
1-66
|
6zhu_H
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.931
|
23786.960
|
8.883
|
10.000
|
22.120
|
9.677
|
48.848
|
51.152
|
14.286
|
7.834
|
57.604
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
28.322
|
1.378
|
1.466
|
3.117
|
22.653
|
122.062
|
14.708
|
154.018
|
0.000
|
4.131
|
2.361
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
2.826
|
2.447
|
-3.045
|
— |
-3.245
|
— | — | — | — | — |