Hg_chrom3_TN10mRNA_5127
Organism: Heterodera glycines Gene Locus: chr3:4554965-4558698 Feature type: polypeptideProtein Sequence
Length: 549
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.89 | 1.525 | 0.828 | 1.005 | 1.123 | 1.354 | 0.651 | 1.002 | 1.295 | 1.157 | 1.104 | 1.5 | 1.872 | 0.736 | 0.558 | 1.119 | 0.896 | 0.69 | 0.42 | 0.857 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4854
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.966
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-30
|
— |
1.000
|
— |
0.000
|
0.273
|
0.298
|
0.095
|
0.369
|
0.268
|
0.211
|
0.144
|
0.064
|
0.317
|
0.776
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000199
|
9.000
|
2.000
|
Hsc_gene_15846.t1;Hsc_gene_15846.t2
|
Hsc_gene_15846.t2
|
— |
Q9N2I2.1 Plasma serine protease inhibitor [Bos taurus]
|
KAI3412091.1 SERPIN [Globodera pallida]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005615
|
GO:0008150_0.789|GO:0005575_0.758|GO:0110165_0.758|GO:0071944_0.539|GO:0016020_0.537|GO:0005622_0.525
|
IPR000215+357-480+|IPR023796+359-480_365-549_483-549+|IPR036186+353-548+|IPR042178+347-480_493-549+|IPR042185+481-492+
|
SM00093+365-549+
|
PF00079+359-480_483-549+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+357-480+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-549
|
7ahp_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
61508.010
|
6.288
|
-1.500
|
23.315
|
12.204
|
48.452
|
51.548
|
12.022
|
11.293
|
48.816
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
16.600
|
2.124
|
1.928
|
0.754
|
1.732
|
45.855
|
2.836
|
108.637
|
0.000
|
11.176
|
6.386
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
4.739
|
-4.006
|
1.141
|
-5.116
|
— | — | — | — | — |