Hg_chrom3_TN10mRNA_5128
Organism: Heterodera glycines Gene Locus: chr3:4559015-4563616 Feature type: polypeptideProtein Sequence
Length: 945
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.677 | 1.206 | 0.885 | 0.766 | 1.199 | 0.923 | 0.869 | 0.688 | 1.34 | 0.887 | 1.315 | 2.054 | 1.822 | 0.834 | 0.929 | 0.816 | 0.815 | 0.786 | 2.116 | 1.058 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4855
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.825
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
RRKKGRKT
|
— | — | — | — |
1-27
|
0.950
|
0.751
|
0.000
|
0.000
|
0.284
|
0.210
|
0.043
|
0.476
|
0.257
|
0.186
|
0.166
|
0.043
|
0.314
|
0.487
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000814
|
1.000
|
5.000
|
Hsc_gene_11113.t1;Hsc_gene_11118.t1;Hsc_gene_1529.t1;Hsc_gene_15845.t1;Hsc_gene_657.t1
|
Hsc_gene_1529.t1;Hsc_gene_657.t1
|
— |
Q8MMG9.1 Trehalase [Pimpla hypochondriaca]
|
KAI3418038.1 Trehalase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991|GO:0006508|GO:0008234
|
GO:0005575_0.808|GO:0110165_0.802|GO:0008150_0.774|GO:0003674_0.721|GO:0016020_0.618|GO:0003824_0.593|GO:0008152_0.547|GO:0016787_0.537|GO:0071944_0.519|GO:0005622_0.510
|
IPR000169+682-693+|IPR000668+669-942_679-940+|IPR001661+68-594_97-586_265-283_393-410_489-505+|IPR008928+76-594+|IPR012341+73-605+|IPR025660+885-895+|IPR038765+620-940+
|
SM00645+669-942+
|
PF00112+679-940+Papain_family_cysteine_protease|PF01204+97-586+Trehalase
|
— |
PTHR23403+68-594+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-945
|
5nis_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
108663.720
|
8.399
|
17.500
|
26.667
|
14.286
|
46.138
|
53.862
|
14.603
|
12.063
|
45.608
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
360.059
|
8.292
|
8.942
|
7.469
|
7.431
|
627.057
|
9.122
|
2218.965
|
1.382
|
491.493
|
281.445
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
6.414
|
-6.094
|
1.720
|
-7.785
|
-8.698
|
— |
-5.909
|
— | — |