Hg_chrom3_TN10mRNA_5130
Organism: Heterodera glycines Gene Locus: chr3:4567502-4570067 Feature type: polypeptideProtein Sequence
Length: 332
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.63 | 1.611 | 0.493 | 0.623 | 0.251 | 0.309 | 0.287 | 0.301 | 2.276 | 1.71 | 0.73 | 0.532 | 3.012 | 0.695 | 0.738 | 1.678 | 0.741 | 1.232 | 1.158 | 1.417 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4857
|
— | — |
1.444
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKALIKVWMEPIKKRIT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.090
|
0.108
|
0.017
|
0.100
|
0.411
|
0.276
|
0.178
|
0.012
|
0.736
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007499
|
1.000
|
1.000
|
Hsc_gene_648.t1
|
Hsc_gene_15843.t1;Hsc_gene_2907.t1;Hsc_gene_2908.t1;Hsc_gene_648.t1
|
— | — |
KAF7633662.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.440
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.949|GO:0005575_0.934|GO:0110165_0.933|GO:0016020_0.913|GO:0009987_0.904|GO:0071944_0.838|GO:0005886_0.836|GO:0003674_0.806|GO:0050896_0.798|GO:0065007_0.796|GO:0050789_0.777|GO:0051716_0.773|GO:0050794_0.755|GO:0023052_0.732|GO:0007154_0.729|GO:0060089_0.728|GO:0038023_0.726|GO:0007165_0.725|GO:0007186_0.714|GO:0004888_0.705|GO:0005488_0.692|GO:0004930_0.677
|
IPR000276+8-32_23-293_41-62_82-104_177-200_231-255_275-301+|IPR017452+23-293+
|
— |
PF00001+23-293+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24243+12-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-332
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
37978.820
|
9.839
|
15.000
|
13.253
|
17.771
|
37.651
|
62.349
|
9.036
|
4.217
|
47.289
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
76.995
|
14.533
|
41.121
|
54.166
|
44.486
|
74.620
|
38.540
|
20.385
|
2.924
|
226.714
|
130.804
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.273
|
1.761
|
0.505
|
— |
0.763
|
-0.953
|
-1.979
|
1.052
|
-6.410
|
4.435
|
— | — | — |
No JSON data available for plots.