Hg_chrom3_TN10mRNA_5132
Organism: Heterodera glycines Gene Locus: chr3:4588861-4590373 Feature type: polypeptideProtein Sequence
Length: 179
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.494 | 1.559 | 0.813 | 1.156 | 1.024 | 1.146 | 0.931 | 2.793 | 1.241 | 1.963 | 0.169 | 0.329 | 1.086 | 0.645 | 1.026 | 0.559 | 0.824 | 0.508 | 1.289 | 0.164 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4859
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.534
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.494
|
0.337
|
0.013
|
0.635
|
0.039
|
0.227
|
0.196
|
0.041
|
0.103
|
0.243
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007501
|
1.000
|
1.000
|
Hsc_gene_15840.t1
|
Hsc_gene_15840.t1;Hsc_gene_15840.t3;Hsc_gene_15840.t4
|
— |
Q61982.1 Neurogenic locus notch homolog protein 3 [Mus musculus]
|
XP_024504191.1 Bent [Strongyloides ratti];CEF64990.1 Bent [Strongyloides ratti]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.799|GO:0005575_0.794|GO:0110165_0.789|GO:0009987_0.704|GO:0016020_0.683|GO:0005622_0.661|GO:0065007_0.617|GO:0050896_0.592|GO:0003674_0.591|GO:0050789_0.583|GO:0050794_0.570|GO:0043226_0.548|GO:0071944_0.540|GO:0043227_0.522|GO:0005886_0.520|GO:0005737_0.505|GO:0008152_0.502
|
IPR002110+15-92_44-73_44-76_77-106_107-164_110-139_110-142_143-172_143-175+|IPR036770+1-94_7-174_95-177+|IPR050842+107-173+
|
SM00248+44-73_77-106_110-139_143-172+
|
PF12796+15-92_107-164+Ankyrin_repeats_(3_copies)
|
— |
PTHR24173+107-173+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-179
|
1n0r_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
19493.080
|
5.947
|
-3.000
|
22.346
|
11.732
|
42.458
|
57.542
|
11.732
|
10.615
|
50.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
369.760
|
355.100
|
188.811
|
102.411
|
96.103
|
269.390
|
138.950
|
148.029
|
115.981
|
1043.667
|
646.087
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.141
|
-1.931
|
-0.774
|
— |
1.501
|
-0.946
|
-0.966
|
— | — | — | — | — | — |
No JSON data available for plots.