SCN Proteipedia

Hg_chrom3_TN10mRNA_5133

Organism: Heterodera glycines Gene Locus: chr3:4592633-4602279 Feature type: polypeptide

Protein Sequence

Length: 980

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.89	0.854	0.872	0.774	1.241	1.491	0.765	1.582	0.998	1.462	0.479	1.561	1.02	1.001	1.083	1.37	0.853	1.005	0.706	0.33	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4860	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Not_Clustered	0.431

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.256	0.429	0.040	0.759	0.201	0.495	0.432	0.102	0.335	0.156

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007502	1.000	1.000	Hsc_gene_15840.t2	Hsc_gene_15840.t2;Hsc_gene_15840.t3;Hsc_gene_15840.t5	—	O44997.2 Death-associated protein kinase dapk-1 [Caenorhabditis elegans]	KAH7728386.1 CBN-DAPK-1 protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0007165	GO:0008150_0.963\|GO:0005575_0.889\|GO:0110165_0.884\|GO:0009987_0.831\|GO:0065007_0.801\|GO:0050789_0.789\|GO:0003674_0.784\|GO:0050794_0.770\|GO:0005622_0.740\|GO:0050896_0.735\|GO:0051716_0.704\|GO:0005488_0.691\|GO:0007154_0.676\|GO:0023052_0.668\|GO:0043226_0.657\|GO:0007165_0.651\|GO:0005515_0.648\|GO:0008219_0.611\|GO:0012501_0.609\|GO:0006915_0.608\|GO:0043067_0.608\|GO:0042981_0.606\|GO:0048583_0.597\|GO:0048519_0.591\|GO:0005737_0.585\|GO:0008152_0.585\|GO:0016020_0.580\|GO:0048523_0.577\|GO:0044238_0.574\|GO:0043170_0.572\|GO:0044237_0.563\|GO:0042221_0.561\|GO:0097190_0.553\|GO:0009605_0.536\|GO:0035556_0.532\|GO:0006950_0.528\|GO:0019538_0.523\|GO:0003824_0.513\|GO:0071944_0.502	IPR000488+873-967_885-964_886-967+\|IPR002110+58-129_65-94_65-97_98-127_98-130_131-160_131-163_136-219_164-193_164-196_197-226_401-433+\|IPR011029+871-966_876-963+\|IPR020859+236-534+\|IPR027417+239-451_241-443+\|IPR036770+1-220_48-219+\|IPR039788+194-863+	SM00005+873-967+\|SM00248+65-94_98-127_131-160_164-193_197-226_401-433+	PF00531+885-964+Death_domain\|PF12796+58-129_136-219+Ankyrin_repeats_(3_copies)	—	PTHR12449+194-863+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-93;308-379	2.000	94-307;380-980	6moi_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.528	107696.960	5.207	-21.500	23.878	8.878	48.163	51.837	11.633	12.245	51.429

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	2464.967	4178.019	2746.477	1511.492	1230.340	3117.145	1710.274	2798.241	3038.644	2020.753	2456.992

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.834	-1.604	-0.753	-0.329	1.356	-0.856	—	-0.569	—	—	—	—	—

No JSON data available for plots.

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