Hg_chrom3_TN10mRNA_5135
Organism: Heterodera glycines Gene Locus: chr3:4622826-4623951 Feature type: polypeptideProtein Sequence
Length: 192
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.393 | 1.211 | 1.136 | 0.718 | 0.868 | 1.068 | 1.054 | 1.562 | 0.926 | 1.619 | 0.158 | 1.838 | 1.013 | 0.701 | 1.169 | 0.967 | 0.939 | 0.947 | 0.801 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4862
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.592
|
0.289
|
0.296
|
0.452
|
0.071
|
0.107
|
0.226
|
0.122
|
0.087
|
0.512
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003538
|
2.000
|
1.000
|
Hsc_gene_7875.t1
|
Hsc_gene_15833.t1;Hsc_gene_2897.t1
|
— | — |
KAI3419128.1 hypothetical protein GPALN_006889 [Globodera pallida]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.876|GO:0110165_0.860|GO:0016020_0.768|GO:0071944_0.728|GO:0005886_0.700|GO:0043226_0.674|GO:0043227_0.658|GO:0032991_0.596|GO:0098590_0.562|GO:0042995_0.558|GO:0120025_0.557|GO:0036477_0.550|GO:0044297_0.549|GO:0005929_0.546|GO:0030990_0.546|GO:0043025_0.546|GO:0097730_0.540
|
IPR002110+8-37_48-77_54-145_81-110_81-113_114-143_114-146+|IPR036770+1-169_10-167+
|
SM00248+8-37_48-77_81-110_114-143+
|
PF12796+54-145+Ankyrin_repeats_(3_copies)
|
— |
PTHR24171+51-145+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11;176-192
|
1.000
|
12-175
|
4z68_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
20482.160
|
4.791
|
-6.000
|
21.354
|
7.812
|
43.229
|
56.771
|
9.896
|
11.458
|
56.771
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
93.085
|
1.524
|
1.334
|
2.031
|
14.534
|
288.658
|
11.374
|
691.092
|
0.000
|
28.294
|
16.168
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
2.807
|
4.318
|
-4.655
|
1.148
|
-5.778
|
— | — | — | — | — |
No JSON data available for plots.