Hg_chrom3_TN10mRNA_5137
Organism: Heterodera glycines Gene Locus: chr3:4631549-4636563 Feature type: polypeptideProtein Sequence
Length: 615
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.153 | 0.983 | 0.946 | 0.673 | 1.111 | 0.917 | 0.813 | 0.976 | 0.903 | 1.209 | 1.38 | 1.148 | 1.762 | 0.563 | 1.029 | 0.976 | 1.066 | 0.887 | 0.5 | 0.43 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4864
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|extracellular
|
— |
KKEFMFVLLPKKRFG,KRFGLTELLAQLDGKKLMK
|
40-107
|
0.775
|
— | — | — | — |
0.000
|
— | — |
0.417
|
0.246
|
0.134
|
0.577
|
0.192
|
0.081
|
0.117
|
0.332
|
0.203
|
0.667
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000246
|
7.000
|
3.000
|
Hsc_gene_16223.t1;Hsc_gene_24660.t1;Hsc_gene_25832.t1
|
— | — |
Q60854.1 Serpin B6 [Mus musculus]
|
KAH7723002.1 ANISERP protein [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005319|GO:0005615|GO:0006869
|
GO:0005575_0.771|GO:0110165_0.769|GO:0008150_0.729|GO:0005622_0.579|GO:0016020_0.574|GO:0003674_0.555|GO:0071944_0.530|GO:0005737_0.511|GO:0009987_0.511
|
IPR000215+246-609+|IPR015816+124-205+|IPR023796+246-609_252-615+|IPR036186+227-608+|IPR042178+255-582+|IPR042185+405-609+
|
SM00093+252-615+
|
PF00079+246-609+Serpin_(serine_protease_inhibitor)
|
— |
PTHR11461+246-609+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-28
|
1.000
|
29-615
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.784
|
68013.820
|
9.270
|
20.000
|
27.967
|
10.407
|
49.106
|
50.894
|
16.098
|
11.870
|
50.244
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
1035.502
|
179.827
|
241.865
|
274.175
|
473.863
|
574.273
|
1137.219
|
362.378
|
23.397
|
3296.424
|
1893.698
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.472
|
0.291
|
0.758
|
0.292
|
0.997
|
-0.775
|
1.796
|
-7.250
|
— | — | — | — |
No JSON data available for plots.