Hg_chrom3_TN10mRNA_5139
Organism: Heterodera glycines Gene Locus: chr3:4647082-4647805 Feature type: polypeptideProtein Sequence
Length: 166
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.981 | 0.841 | 0.548 | 0.415 | 1.104 | 1.545 | 1.147 | 0.602 | 0.803 | 0.895 | 1.095 | 2.835 | 0.837 | 1.39 | 1.844 | 1.033 | 0.889 | 0.73 | 0.463 | 0.177 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4866
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus|cell_membrane
|
— |
KRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.528
|
0.238
|
0.106
|
0.391
|
0.129
|
0.116
|
0.119
|
0.100
|
0.573
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007503
|
1.000
|
1.000
|
Hsc_gene_15834.t1
|
Hsc_gene_15834.t1
|
— | — |
KAI3415346.1 hypothetical protein GPALN_004958 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR38608+1-127+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-166
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.818
|
18220.920
|
10.911
|
12.000
|
27.108
|
5.422
|
49.398
|
50.602
|
17.470
|
9.639
|
50.602
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
515.585
|
1228.046
|
420.843
|
779.212
|
1436.442
|
607.222
|
202.430
|
791.337
|
36.846
|
178.475
|
117.777
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.772
|
-0.793
|
0.996
|
0.851
|
-1.229
|
-1.574
|
— |
-1.827
|
— |
4.602
|
— | — | — |
No JSON data available for plots.