Hg_chrom3_TN10mRNA_5140
Organism: Heterodera glycines Gene Locus: chr3:4650568-4652393 Feature type: polypeptideProtein Sequence
Length: 370
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.383 | 1.257 | 1.376 | 0.559 | 1.126 | 1.455 | 0.869 | 1.486 | 1.201 | 1.424 | 0.205 | 1.908 | 1.276 | 0.468 | 1.213 | 0.695 | 0.753 | 1.024 | 0.416 | 0.159 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4867
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— |
KRAR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.517
|
0.303
|
0.042
|
0.596
|
0.133
|
0.189
|
0.204
|
0.008
|
0.179
|
0.491
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007504
|
1.000
|
1.000
|
Hsc_gene_15833.t1
|
Hsc_gene_15833.t1;Hsc_gene_2897.t1
|
— |
Q55FM5.1 Myotrophin homolog [Dictyostelium discoideum]
|
XP_042242438.1 myotrophin-like [Homarus americanus];KAG7157709.1 Myotrophin-like [Homarus americanus]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.718|GO:0008150_0.706|GO:0110165_0.702|GO:0003674_0.613|GO:0009987_0.579|GO:0005622_0.560|GO:0016020_0.528
|
IPR002110+88-117_128-157_134-225_161-190_161-193_194-223_194-226_233-321_262-291_262-294_295-324_295-327+|IPR036770+42-370_52-349+|IPR051165+87-336+
|
SM00248+88-117_128-157_161-190_194-223_262-291_295-324+
|
PF12796+134-225_233-321+Ankyrin_repeats_(3_copies)
|
— |
PTHR24123+87-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
334-370
|
1.000
|
1-333
|
4hqd_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
40403.510
|
4.405
|
-20.500
|
24.595
|
8.649
|
45.135
|
54.865
|
10.270
|
14.324
|
52.432
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
655.316
|
11.562
|
9.562
|
29.510
|
99.310
|
1998.579
|
66.954
|
3761.900
|
0.000
|
625.489
|
357.423
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.216
|
1.739
|
1.721
|
4.345
|
-4.887
|
0.800
|
-5.663
|
-10.084
|
5.740
|
— | — | — |
No JSON data available for plots.