Hg_chrom3_TN10mRNA_5142
Organism: Heterodera glycines Gene Locus: chr3:4660368-4661112 Feature type: polypeptideProtein Sequence
Length: 133
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.311 | 1.749 | 0.957 | 0.0 | 0.501 | 0.578 | 1.701 | 0.752 | 0.668 | 1.016 | 1.139 | 1.327 | 0.418 | 1.591 | 0.767 | 1.182 | 0.616 | 0.684 | 2.892 | 0.221 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4869
|
— | — |
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
Hsc_gene_15762;Hsc_gene_15757;Hsc_gene_15826
|
— | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KGKAPSGESKPNPGQKPSGERRKR
|
— | — | — | — | — | — |
0.445
|
— | — |
0.508
|
0.164
|
0.012
|
0.333
|
0.126
|
0.025
|
0.079
|
0.082
|
0.090
|
0.502
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000298
|
7.000
|
2.000
|
Hsc_gene_15762.t1;Hsc_gene_15765.t1
|
Hsc_gene_15757.t1;Hsc_gene_15758.t1;Hsc_gene_15762.t1;Hsc_gene_15765.t1;Hsc_gene_15766.t1;Hsc_gene_15823.t1;Hsc_gene_15824.t1;Hsc_gene_15825.t1;Hsc_gene_15825.t2;Hsc_gene_15825.t3;Hsc_gene_15826.t1
|
— | — |
AAO33475.1 gland-specific protein g5d08 [Heterodera glycines]
|
WP_269018662
|
0.610
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-133
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.961
|
13845.530
|
10.291
|
5.000
|
21.053
|
7.519
|
42.857
|
57.143
|
12.782
|
8.271
|
63.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
192.041
|
0.678
|
0.932
|
2.236
|
0.178
|
9.231
|
1.419
|
1715.470
|
0.000
|
191.375
|
109.357
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
-3.760
|
5.803
|
-2.688
|
7.434
|
-10.098
|
-7.548
|
— | — | — | — |
No JSON data available for plots.