Hg_chrom3_TN10mRNA_5143
Organism: Heterodera glycines Gene Locus: chr3:4661618-4662215 Feature type: polypeptideProtein Sequence
Length: 134
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.302 | 1.736 | 0.95 | 0.0 | 0.498 | 0.574 | 1.688 | 0.746 | 0.663 | 1.109 | 1.131 | 1.317 | 0.415 | 1.579 | 0.761 | 1.173 | 0.612 | 0.678 | 2.87 | 0.219 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4870
|
— | — |
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_15762;Hsc_gene_15757;Hsc_gene_15826
|
— | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KGKAPSGESKPNPGQKPSGERRKR
|
— | — | — | — |
1-26
|
— |
0.603
|
— |
0.000
|
0.452
|
0.274
|
0.006
|
0.236
|
0.246
|
0.028
|
0.136
|
0.027
|
0.085
|
0.720
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000298
|
7.000
|
2.000
|
Hsc_gene_15762.t1;Hsc_gene_15765.t1
|
Hsc_gene_15757.t1;Hsc_gene_15758.t1;Hsc_gene_15762.t1;Hsc_gene_15765.t1;Hsc_gene_15766.t1;Hsc_gene_15823.t1;Hsc_gene_15824.t1;Hsc_gene_15825.t1;Hsc_gene_15825.t2;Hsc_gene_15825.t3;Hsc_gene_15826.t1
|
— | — |
AAO33475.1 gland-specific protein g5d08 [Heterodera glycines]
|
MDO5067602
|
0.620
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-134
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.963
|
13958.690
|
10.291
|
5.000
|
20.896
|
7.463
|
42.537
|
57.463
|
12.687
|
8.209
|
62.687
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
185.587
|
0.228
|
0.354
|
1.617
|
0.804
|
6.741
|
1.523
|
2023.205
|
1.537
|
47.864
|
28.010
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
3.061
|
-2.129
|
8.127
|
-10.235
|
— | — | — | — | — |