Hg_chrom3_TN10mRNA_5144
Organism: Heterodera glycines Gene Locus: chr3:4663386-4670984 Feature type: polypeptideProtein Sequence
Length: 689
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.844 | 0.911 | 0.897 | 1.051 | 1.185 | 1.265 | 0.536 | 1.161 | 1.097 | 1.236 | 0.858 | 1.537 | 1.451 | 0.865 | 1.659 | 0.829 | 1.071 | 0.968 | 0.67 | 0.64 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4871
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.610
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
44-64
|
0.977
|
49-76
|
0.851
|
— | — |
0.000
|
— | — |
0.565
|
0.362
|
0.074
|
0.586
|
0.039
|
0.106
|
0.079
|
0.041
|
0.067
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003540
|
2.000
|
1.000
|
Hsc_gene_15822.t1
|
— | — |
O95985.1 DNA topoisomerase 3-beta-1 [Homo sapiens]
|
KAF7637397.1 DNA topoisomerase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003916|GO:0003917|GO:0006265
|
GO:0005575_0.758|GO:0110165_0.750|GO:0008150_0.720|GO:0005622_0.676|GO:0009987_0.651|GO:0003674_0.626|GO:0043226_0.593|GO:0043229_0.569|GO:0005488_0.564|GO:0016020_0.526
|
IPR000380+1-677+|IPR003601+150-246+|IPR003602+294-575+|IPR006171+2-137_2-152_3-139+|IPR013497+111-124_174-610_176-618_216-234_336-345_432-448_536-550+|IPR013824+182-616+|IPR013825+240-520+|IPR013826+302-446+|IPR023405+3-619+|IPR023406+331-345+|IPR034144+3-171+
|
SM00436+150-246+|SM00437+294-575+|SM00493+2-137+
|
PF01131+174-610+DNA_topoisomerase|PF01751+3-139+Toprim_domain
|
— |
PTHR11390+1-677+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-689
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
78729.460
|
8.513
|
20.000
|
28.157
|
10.595
|
49.347
|
50.653
|
16.110
|
12.046
|
46.880
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
536.907
|
1303.758
|
538.886
|
470.466
|
556.523
|
474.204
|
815.226
|
447.500
|
245.309
|
437.526
|
355.147
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.504
|
-1.608
|
— |
0.211
|
-0.217
|
0.792
|
— |
1.008
|
— | — | — | — | — |
No JSON data available for plots.