Hg_chrom3_TN10mRNA_5147
Organism: Heterodera glycines Gene Locus: chr3:4682415-4684326 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.907 | 0.533 | 0.917 | 0.475 | 1.147 | 1.529 | 0.655 | 1.376 | 1.733 | 1.426 | 0.973 | 1.619 | 0.637 | 0.794 | 1.685 | 0.524 | 1.053 | 1.043 | 0.706 | 0.675 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4874
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.861
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.665
|
0.369
|
0.194
|
0.542
|
0.032
|
0.092
|
0.062
|
0.037
|
0.027
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003540
|
2.000
|
1.000
|
Hsc_gene_15822.t1
|
— | — |
Q9Z321.1 DNA topoisomerase 3-beta-1 [Mus musculus]
|
KAF7637397.1 DNA topoisomerase [Meloidogyne graminicola]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003916|GO:0003917|GO:0006265
|
GO:0005575_0.769|GO:0110165_0.754|GO:0005622_0.712|GO:0008150_0.672|GO:0043226_0.648|GO:0043229_0.637|GO:0009987_0.622|GO:0003674_0.590|GO:0016020_0.551|GO:0005488_0.526
|
IPR000380+16-206+|IPR003602+1-166+|IPR013497+15-202+|IPR013824+112-208+|IPR013825+38-111+|IPR013826+15-37+|IPR023405+9-206+
|
SM00437+1-166+
|
PF01131+15-202+DNA_topoisomerase
|
— |
PTHR11390+16-206+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-218
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
24798.840
|
9.639
|
9.000
|
29.358
|
8.257
|
47.706
|
52.294
|
17.431
|
11.927
|
43.119
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
brown
|
26.211
|
42.488
|
37.674
|
26.709
|
30.061
|
25.221
|
84.532
|
34.770
|
6.202
|
4.477
|
5.216
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.404
|
-0.807
|
— | — | — |
1.752
|
— |
1.420
|
— | — | — | — | — |
No JSON data available for plots.