Hg_chrom3_TN10mRNA_5149
Organism: Heterodera glycines Gene Locus: chr3:4697342-4699112 Feature type: polypeptideProtein Sequence
Length: 477
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.731 | 1.463 | 1.029 | 0.361 | 3.319 | 0.645 | 0.874 | 0.839 | 1.118 | 0.538 | 1.144 | 0.493 | 1.689 | 0.282 | 1.027 | 0.839 | 1.031 | 0.476 | 1.129 | 0.74 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4876
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
— | — | — | — | — | — |
1-19
|
0.928
|
1.000
|
0.000
|
0.000
|
0.086
|
0.126
|
0.012
|
0.188
|
0.147
|
0.070
|
0.167
|
0.037
|
0.801
|
0.452
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007505
|
1.000
|
1.000
|
Hsc_gene_15813.t1
|
— | — | — |
KAF7632146.1 C-type lectin domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR016186+143-270+|IPR016187+155-260+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-155;250-477
|
1.000
|
156-249
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.975
|
55015.330
|
4.160
|
-58.000
|
39.832
|
11.740
|
60.797
|
39.203
|
14.256
|
25.577
|
43.396
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
2216.918
|
15.405
|
552.860
|
651.822
|
142.098
|
13.219
|
24.108
|
36.149
|
10061.304
|
1614.663
|
5234.652
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.934
|
5.262
|
0.346
|
-2.230
|
-3.409
|
0.876
|
1.347
|
— |
2.529
|
-3.794
|
-3.439
|
— | — |