Hg_chrom3_TN10mRNA_5155
Organism: Heterodera glycines Gene Locus: chr3:4730330-4733545 Feature type: polypeptideProtein Sequence
Length: 281
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.538 | 1.159 | 0.971 | 0.245 | 1.305 | 1.369 | 0.805 | 1.601 | 0.791 | 1.154 | 0.809 | 2.093 | 1.384 | 0.958 | 1.017 | 1.169 | 1.225 | 0.917 | 1.095 | 0.628 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4882
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRVEQQSPINFELSALKRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.364
|
0.196
|
0.058
|
0.702
|
0.128
|
0.335
|
0.185
|
0.039
|
0.116
|
0.268
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000402
|
5.000
|
3.000
|
Hsc_gene_24000.t1;Hsc_gene_24000.t2;Hsc_gene_24000.t3
|
— | — |
Q27504.1 Putative carbonic anhydrase 3 [Caenorhabditis elegans]
|
KAI6192006.1 Alpha carbonic anhydrase domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004089|GO:0008270
|
GO:0005575_0.801|GO:0110165_0.798|GO:0003674_0.719|GO:0008150_0.666|GO:0005622_0.638|GO:0005737_0.576|GO:0016020_0.544|GO:0003824_0.539
|
IPR001148+9-279_16-277_32-276+|IPR018338+115-131+|IPR023561+32-274+|IPR036398+8-277_34-278+
|
SM01057+16-277+
|
PF00194+32-276+Eukaryotic-type_carbonic_anhydrase
|
— |
PTHR18952+32-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-40
|
1.000
|
41-281
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
31776.710
|
5.823
|
-3.500
|
26.690
|
11.744
|
52.669
|
47.331
|
13.523
|
13.167
|
49.110
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
86.336
|
29.192
|
42.277
|
67.857
|
117.020
|
76.276
|
73.911
|
59.491
|
8.063
|
196.914
|
115.978
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.080
|
0.793
|
0.754
|
-0.604
|
— | — | — |
-4.712
|
— | — | — | — |
No JSON data available for plots.