Hg_chrom3_TN10mRNA_5160
Organism: Heterodera glycines Gene Locus: chr3:4765011-4768485 Feature type: polypeptideProtein Sequence
Length: 290
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.521 | 0.882 | 1.003 | 0.595 | 0.287 | 1.768 | 0.534 | 2.069 | 1.456 | 1.538 | 0.522 | 1.42 | 1.437 | 0.796 | 1.689 | 1.478 | 0.622 | 1.045 | 0.796 | 1.116 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4887
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
30-50
|
0.935
|
— | — | — | — |
0.000
|
— | — |
0.294
|
0.287
|
0.023
|
0.220
|
0.672
|
0.311
|
0.495
|
0.029
|
0.444
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007511
|
1.000
|
1.000
|
Hsc_gene_15802.t3
|
Hsc_gene_15802.t1;Hsc_gene_15802.t2;Hsc_gene_15802.t3
|
— |
Q5U395.1 CTD nuclear envelope phosphatase 1A [Danio rerio]
|
KAI3415352.1 CTD nuclear envelope phosphatase 1A [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016791
|
GO:0008150_0.902|GO:0005575_0.758|GO:0110165_0.757|GO:0009987_0.746|GO:0065007_0.687|GO:0050789_0.663|GO:0016020_0.653|GO:0005622_0.633|GO:0050794_0.603|GO:0043226_0.569|GO:0043229_0.550|GO:0043227_0.526
|
IPR004274+86-253_89-241_91-260+|IPR011948+90-263+|IPR023214+78-268+|IPR036412+81-263+|IPR050365+77-266+
|
SM00577+89-241+
|
PF03031+91-260+NLI_interacting_factor-like_phosphatase
|
G3DSA:3.40.50.1000:FF:000044+79-267+CTD_nuclear_envelope_phosphatase_1
|
PTHR12210+77-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5;290-290
|
1.000
|
6-289
|
8ujm_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.797
|
33416.510
|
10.087
|
19.000
|
23.103
|
14.138
|
47.931
|
52.069
|
15.862
|
7.241
|
45.172
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
441.831
|
323.426
|
280.291
|
349.165
|
472.715
|
400.951
|
852.577
|
246.347
|
126.385
|
741.171
|
477.691
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.437
|
— |
0.426
|
0.405
|
-0.223
|
1.098
|
-0.804
|
1.931
|
— | — | — | — | — |
No JSON data available for plots.