Hg_chrom3_TN10mRNA_5166
Organism: Heterodera glycines Gene Locus: chr3:4813684-4828931 Feature type: polypeptideProtein Sequence
Length: 1,560
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.909 | 1.222 | 1.026 | 0.973 | 0.897 | 1.167 | 0.694 | 1.763 | 0.997 | 1.473 | 0.466 | 1.207 | 1.531 | 1.146 | 1.531 | 1.062 | 0.757 | 0.728 | 0.592 | 0.603 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4893
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— |
19-41
|
0.956
|
1-37
|
0.730
|
1-29
|
0.814
|
0.540
|
0.000
|
0.000
|
0.184
|
0.170
|
0.218
|
0.303
|
0.079
|
0.100
|
0.098
|
0.089
|
0.485
|
0.761
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007515
|
1.000
|
1.000
|
Hsc_gene_15790.t1
|
Hsc_gene_15790.t1
|
— |
P90820.3 Heme peroxidase 2 [Caenorhabditis elegans]
|
KAI1720361.1 heme peroxidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979|GO:0020037
|
GO:0008150_0.887|GO:0009987_0.831|GO:0005575_0.797|GO:0110165_0.791|GO:0003674_0.697|GO:0050896_0.607|GO:0003824_0.554|GO:0051716_0.549|GO:0008152_0.531
|
IPR010255+202-771_908-1484+|IPR019791+199-773_207-743_905-1486_914-1458_938-949_985-1000_1130-1148_1148-1168_1173-1199_1233-1243_1360-1380_1434-1448+|IPR037120+196-773_896-1487+|IPR050702+780-1485+
|
— |
PF03098+207-743_914-1458+Animal_haem_peroxidase
|
G3DSA:1.10.640.10:FF:000003+193-772+chorion_peroxidase|G3DSA:1.10.640.10:FF:000006+900-1486+Double_oxidase:_two_peroxidase_domains
|
PTHR11475+780-1485+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1560
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
175133.040
|
7.190
|
20.500
|
25.128
|
11.859
|
46.987
|
53.013
|
14.103
|
11.026
|
50.192
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
974.309
|
251.604
|
58.349
|
44.102
|
1206.498
|
2743.211
|
247.014
|
406.752
|
28.514
|
2382.144
|
1373.446
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.338
|
-2.649
|
— |
4.742
|
1.202
|
-3.465
|
-2.868
|
-0.575
|
-6.520
|
— | — | — | — |